RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 HHATLQ9HCP6 504 aa12.1□□□□□ -0.47
PRPF39-204ENST00000553605 NTMQ9P121 344 aa12.1□□□□□ -0.47
PRPF39-204ENST00000553605 TXNDC16Q9P2K2 825 aa12.1□□□□□ -0.47
PRPF39-204ENST00000553605 ING1Q9UK53 422 aaPredicted RBP12.1□□□□□ -0.47
PRPF39-204ENST00000553605 SLC12A4Q9UP95 1085 aa12.1□□□□□ -0.47
PRPF39-204ENST00000553605 VWFP04275 2813 aa12.1□□□□□ -0.47
PRPF39-204ENST00000553605 IGHV3-15A0A0B4J1V0 119 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 RGS14O43566 566 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 MPIP34949 423 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 FNTAP49354 379 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 ALDH18A1P54886 795 aaKnown RBP12.09□□□□□ -0.47
PRPF39-204ENST00000553605 SLC18A2Q05940 514 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 IFT88Q13099 833 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 SGO1Q5FBB7 561 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 RAPH1Q70E73 1250 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 SLC46A3Q7Z3Q1 461 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 ZNF100Q8IYN0 542 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 FAM9CQ8IZT9 166 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 RBBP8Q99708 897 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 NOL11Q9H8H0 719 aaKnown RBP12.09□□□□□ -0.47
PRPF39-204ENST00000553605 GIMAP4Q9NUV9 329 aa12.09□□□□□ -0.47
PRPF39-204ENST00000553605 CCT8L1PA6NM43 557 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 GJE1A6NN92 205 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 CXorf49A8MYA2 514 aaPredicted RBP12.08□□□□□ -0.48
PRPF39-204ENST00000553605 ALG1L2C9J202 215 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 OR7A17O14581 309 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 EFNA2O43921 213 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 IVDP26440 423 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 EIF1P41567 113 aaKnown RBP12.08□□□□□ -0.48
PRPF39-204ENST00000553605 ARL4CP56559 192 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 RASGEF1BQ0VAM2 473 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 FASTKD3Q14CZ7 662 aaKnown RBP12.08□□□□□ -0.48
PRPF39-204ENST00000553605 ZNHIT3Q15649 155 aaPredicted RBP12.08□□□□□ -0.48
PRPF39-204ENST00000553605 TMEM176BQ3YBM2 270 aaPredicted RBP12.08□□□□□ -0.48
PRPF39-204ENST00000553605 SHQ1Q6PI26 577 aaKnown RBP12.08□□□□□ -0.48
PRPF39-204ENST00000553605 GLCCI1Q86VQ1 547 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 SVOPLQ8N434 492 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 GATSQ8NAP1 163 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 MRPL24Q96A35 216 aaKnown RBP12.08□□□□□ -0.48
PRPF39-204ENST00000553605 ZNF300Q96RE9 604 aaPredicted RBP12.08□□□□□ -0.48
PRPF39-204ENST00000553605 LZTFL1Q9NQ48 299 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 SLC35C2Q9NQQ7 365 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 TRAF6Q9Y4K3 522 aa12.08□□□□□ -0.48
PRPF39-204ENST00000553605 TNPO3Q9Y5L0 923 aaKnown RBP12.08□□□□□ -0.48
PRPF39-204ENST00000553605 HEATR1Q9H583 2144 aaKnown RBP12.08□□□□□ -0.48
PRPF39-204ENST00000553605 A0A087WV62 115 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 B4DSR2 109 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 KCNH1O95259 989 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 SLU7O95391 586 aaKnown RBP12.07□□□□□ -0.48
PRPF39-204ENST00000553605 IGKV1D-16P01601 117 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 IL3P08700 152 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 LINGO3P0C6S8 592 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 CCNG1P51959 295 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 FOXL1Q12952 345 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 PDIA2Q13087 525 aaKnown RBP12.07□□□□□ -0.48
PRPF39-204ENST00000553605 FBXW9Q5XUX1 488 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 THSD4Q6ZMP0 1018 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 GALNT5Q7Z7M9 940 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 UBE2J2Q8N2K1 259 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 C1orf52Q8N6N3 182 aaKnown RBP12.07□□□□□ -0.48
PRPF39-204ENST00000553605 TOR1AIP2Q8NFQ8 470 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 OR4C3Q8NH37 302 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 RHEBL1Q8TAI7 183 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 ZNF75CPQ92670 426 aaPredicted RBP12.07□□□□□ -0.48
PRPF39-204ENST00000553605 SH3YL1Q96HL8 342 aaPredicted RBP12.07□□□□□ -0.48
PRPF39-204ENST00000553605 MUS81Q96NY9 551 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 CPNE1Q99829 537 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 KLHDC3Q9BQ90 382 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 SAP130Q9H0E3 1048 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 ELOVL6Q9H5J4 265 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 COQ10BQ9H8M1 238 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 C3orf14Q9HBI5 128 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 FARSBQ9NSD9 589 aaKnown RBP12.07□□□□□ -0.48
PRPF39-204ENST00000553605 C19orf53Q9UNZ5 99 aaPredicted RBP12.07□□□□□ -0.48
PRPF39-204ENST00000553605 USP22Q9UPT9 525 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 SPEF1Q9Y4P9 236 aa12.07□□□□□ -0.48
PRPF39-204ENST00000553605 GXYLT2A0PJZ3 443 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 ZNF724A8MTY0 619 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 ATP6V1G2-DDX39BF2Z307 99 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 ZNF195O14628 629 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 OXSR1O95747 527 aaPredicted RBP12.06□□□□□ -0.48
PRPF39-204ENST00000553605 IGHV3-9P01782 118 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 DAOP14920 347 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 ELK4P28324 431 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 GABRA3P34903 492 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 SERPINF1P36955 418 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 GP5P40197 560 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 RAC3P60763 192 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 FOXF1Q12946 379 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 CCNIQ14094 377 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 TRIP10Q15642 601 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 OR7E24Q6IFN5 339 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 METTL2BQ6P1Q9 378 aaKnown RBP12.06□□□□□ -0.48
PRPF39-204ENST00000553605 CMC1Q7Z7K0 106 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 ATP6V1C2Q8NEY4 427 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 ZFP90Q8TF47 636 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 CDKL2Q92772 493 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 PBKQ96KB5 322 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 BBS4Q96RK4 519 aa12.06□□□□□ -0.48
PRPF39-204ENST00000553605 LMF2Q9BU23 707 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms