RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 RFC2P35250 354 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 PPIAP62937 165 aaKnown RBP3.85□□□□□ -1.79
LIMA1-205ENST00000550592 PRKCEQ02156 737 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 HSF2Q03933 536 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 ZP4Q12836 540 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 RFTN1Q14699 578 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-205ENST00000550592 CCDC152Q4G0S7 254 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 C14orf28Q4W4Y0 310 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 NHLRC3Q5JS37 347 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 ACER2Q5QJU3 275 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 LEMD1Q68G75 181 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 ZNF562Q6V9R5 426 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 P4HA3Q7Z4N8 544 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 SLC25A42Q86VD7 318 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 MISPQ8IVT2 679 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 CCDC36Q8IYA8 594 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 CENPSQ8N2Z9 138 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 SUMF1Q8NBK3 374 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 OR52J3Q8NH60 311 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 GIPC3Q8TF64 312 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 PINX1Q96BK5 328 aaKnown RBP3.85□□□□□ -1.79
LIMA1-205ENST00000550592 RBM18Q96H35 190 aaKnown RBP3.85□□□□□ -1.79
LIMA1-205ENST00000550592 ESM1Q9NQ30 184 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 TRPV5Q9NQA5 729 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 GDAP2Q9NXN4 497 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 KLRF1Q9NZS2 232 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 RCOR3Q9P2K3 495 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-205ENST00000550592 GHRLQ9UBU3 117 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 ANGPTL2Q9UKU9 493 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 FOXJ3Q9UPW0 622 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 RNF24Q9Y225 148 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.85□□□□□ -1.79
LIMA1-205ENST00000550592 U3KQV3 271 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 GBF1Q92538 1859 aa3.85□□□□□ -1.79
LIMA1-205ENST00000550592 DNAH12Q6ZR08 3092 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 IGHV3OR16-12A0A075B7B8 117 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 A0A087WZY1 265 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 A0A0U1RQV5 110 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 CYSRT1A8MQ03 144 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 H0YL77 283 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 CLDN3O15551 220 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 SMPD2O60906 423 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 SDC3O75056 442 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 SCGB2A1O75556 95 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 DIRAS3O95661 229 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 IGHV3-9P01782 118 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 DESP17661 470 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 AXLP30530 894 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 ADRA1AP35348 466 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 MDH1P40925 334 aaKnown RBP3.84□□□□□ -1.79
LIMA1-205ENST00000550592 POLR2FP61218 127 aaKnown RBP3.84□□□□□ -1.79
LIMA1-205ENST00000550592 IL9RQ01113 521 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 LPAL2Q16609 132 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 DMKNQ6E0U4 476 aaPredicted RBP3.84□□□□□ -1.79
LIMA1-205ENST00000550592 REG3GQ6UW15 175 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 GTSCR1Q86UQ5 136 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 POM121L12Q8N7R1 296 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 ITLN1Q8WWA0 313 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 SELENOMQ8WWX9 145 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 CRYGNQ8WXF5 182 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 TOMM40LQ969M1 308 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 RAB3CQ96E17 227 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 RPAP3Q9H6T3 665 aaPredicted RBP3.84□□□□□ -1.79
LIMA1-205ENST00000550592 KAT8Q9H7Z6 458 aaKnown RBP3.84□□□□□ -1.79
LIMA1-205ENST00000550592 RAI14Q9P0K7 980 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 CTNNA3Q9UI47 895 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 TBX21Q9UL17 535 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 RNF115Q9Y4L5 304 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 MROH7Q68CQ1 1323 aa3.84□□□□□ -1.79
LIMA1-205ENST00000550592 GCN1Q92616 2671 aaKnown RBP3.84□□□□□ -1.8
LIMA1-205ENST00000550592 COL4A1P02462 1669 aa3.84□□□□□ -1.8
LIMA1-205ENST00000550592 SIPA1L3O60292 1781 aaPredicted RBP3.84□□□□□ -1.8
LIMA1-205ENST00000550592 PLXNB2O15031 1838 aa3.84□□□□□ -1.8
LIMA1-205ENST00000550592 FRMPD3Q5JV73 1810 aa3.84□□□□□ -1.8
LIMA1-205ENST00000550592 CNOT1A5YKK6 2376 aaKnown RBP3.83□□□□□ -1.8
LIMA1-205ENST00000550592 REV3LO60673 3130 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 TTC26A0AVF1 554 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 MFSD2BA6NFX1 497 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 LANCL1O43813 399 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 SH3BGRLO75368 114 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 AK1P00568 194 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 CYBAP13498 195 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 TSPAN8P19075 237 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 ELK3P41970 407 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 BRCC3P46736 316 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 ARHGDIAP52565 204 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 TRA2BP62995 288 aaKnown RBP3.83□□□□□ -1.8
LIMA1-205ENST00000550592 ZNF33BQ06732 778 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 TAF7Q15545 349 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-205ENST00000550592 CDKN3Q16667 212 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 HSP90AA5PQ58FG0 334 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 BEND6Q5SZJ8 279 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-205ENST00000550592 SEL1L2Q5TEA6 688 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 FKBP1CQ5VVH2 108 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 TSEN54Q7Z6J9 526 aaKnown RBP3.83□□□□□ -1.8
LIMA1-205ENST00000550592 FNDC8Q8TC99 324 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 PHOSPHO2Q8TCD6 241 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 RSPH1Q8WYR4 309 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 ADIPOR1Q96A54 375 aa3.83□□□□□ -1.8
LIMA1-205ENST00000550592 CARD6Q9BX69 1037 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms