RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 MS4A6EQ96DS6 147 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 ARHGAP9Q9BRR9 750 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 MROQ9BYG7 248 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 ZNF69Q9UC07 566 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 AP1M2Q9Y6Q5 423 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 SEC14L2O76054 403 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 OPN1LWP04000 364 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 BMP4P12644 408 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 MRPS21P82921 87 aaKnown RBP15.21■□□□□ 0.03
CUX1-213ENST00000549414 EIF4EBP2Q13542 120 aaPredicted RBP15.21■□□□□ 0.03
CUX1-213ENST00000549414 TDGQ13569 410 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.21■□□□□ 0.031e-6■□□□□ 9
CUX1-213ENST00000549414 KLHL26Q53HC5 615 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 SLC37A2Q8TED4 501 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 MMP28Q9H239 520 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 LDAHQ9H6V9 325 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 SERGEFQ9UGK8 458 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 FMO6PO60774 539 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 UPK1BO75841 260 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 PEPDP12955 493 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 CNIH2Q6PI25 160 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 TIGD4Q8IY51 512 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 LAS2Q8IYD9 372 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 ARMC10Q8N2F6 343 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 SDR16C5Q8N3Y7 309 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 FAM160A2Q8N612 972 aaPredicted RBP15.21■□□□□ 0.03
CUX1-213ENST00000549414 BCL7BQ9BQE9 202 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 PELOQ9BRX2 385 aaKnown RBP15.21■□□□□ 0.03
CUX1-213ENST00000549414 RPP25Q9BUL9 199 aaKnown RBP15.21■□□□□ 0.03
CUX1-213ENST00000549414 STRADBQ9C0K7 418 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 ACER3Q9NUN7 267 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 RARRES3Q9UL19 164 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 TBC1D24Q9ULP9 559 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 VDAC3Q9Y277 283 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 AK6Q9Y3D8 172 aaKnown RBP15.21■□□□□ 0.03
CUX1-213ENST00000549414 LRRN3E7EW58 273 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 TOXO94900 526 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 PGCP20142 388 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 HOXC12P31275 282 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 TGFBR1P36897 503 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 TGFBR2P37173 567 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 ATRXP46100 2492 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 HES5Q5TA89 166 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 TMEM163Q8TC26 289 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 TMEM234Q8WY98 164 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 FAM210AQ96ND0 272 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 LRRN3Q9H3W5 708 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 RNF167Q9H6Y7 350 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 NTNG1Q9Y2I2 539 aa15.21■□□□□ 0.03
CUX1-213ENST00000549414 H3BML4 177 aa15.21■□□□□ 0.02
CUX1-213ENST00000549414 S100A1P23297 94 aa15.21■□□□□ 0.02
CUX1-213ENST00000549414 CD6P30203 668 aa15.21■□□□□ 0.02
CUX1-213ENST00000549414 TNFSF8P32971 234 aa15.21■□□□□ 0.02
CUX1-213ENST00000549414 RELAQ04206 551 aa15.21■□□□□ 0.02
CUX1-213ENST00000549414 MAB21L1Q13394 359 aa15.21■□□□□ 0.02
CUX1-213ENST00000549414 TRMT12Q53H54 448 aaKnown RBP15.21■□□□□ 0.02
CUX1-213ENST00000549414 KIAA1211LQ6NV74 962 aa15.21■□□□□ 0.02
CUX1-213ENST00000549414 ZNF227Q86WZ6 799 aa15.21■□□□□ 0.02
CUX1-213ENST00000549414 FBXL6Q8N531 539 aa15.21■□□□□ 0.02
CUX1-213ENST00000549414 OR6C4Q8NGE1 309 aa15.21■□□□□ 0.02
CUX1-213ENST00000549414 MAP3K3Q99759 626 aa15.21■□□□□ 0.02
CUX1-213ENST00000549414 TTYH1Q9H313 450 aaPredicted RBP15.21■□□□□ 0.02
CUX1-213ENST00000549414 POT1Q9NUX5 634 aa15.21■□□□□ 0.02
CUX1-213ENST00000549414 FARSAQ9Y285 508 aaKnown RBP15.21■□□□□ 0.02
CUX1-213ENST00000549414 A0A1W2PQ72 361 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 MMP11P24347 488 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 EPHA5P54756 1037 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 PER3P56645 1201 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 RAB40BQ12829 278 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 TSPAN31Q12999 210 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 KIAA0040Q15053 153 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 SLC25A25Q6KCM7 469 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 TMEM184AQ6ZMB5 413 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 OR8H3Q8N146 312 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 TMEM255BQ8WV15 326 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 C6orf106Q9H6K1 298 aaPredicted RBP15.2■□□□□ 0.02
CUX1-213ENST00000549414 PTGES2Q9H7Z7 377 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 LRIT1Q9P2V4 623 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 MRPS14O60783 128 aaKnown RBP15.2■□□□□ 0.02
CUX1-213ENST00000549414 RAB3BP20337 219 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 SLC35A2P78381 396 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 NDUFA5Q16718 116 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 PPP4R1LQ9P1A2 415 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 DHCR7Q9UBM7 475 aaKnown RBP15.2■□□□□ 0.02
CUX1-213ENST00000549414 CACNA1IQ9P0X4 2223 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 OTX2P32243 289 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 GDI2P50395 445 aaKnown RBP15.2■□□□□ 0.02
CUX1-213ENST00000549414 UBQLNLQ8IYU4 475 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 SYT14Q8NB59 555 aa15.2■□□□□ 0.02
CUX1-213ENST00000549414 ATOH1Q92858 354 aaPredicted RBP15.2■□□□□ 0.02
CUX1-213ENST00000549414 HMGN4O00479 90 aa15.19■□□□□ 0.02
CUX1-213ENST00000549414 NCR1O76036 304 aa15.19■□□□□ 0.02
CUX1-213ENST00000549414 SEC23BQ15437 767 aa15.19■□□□□ 0.02
CUX1-213ENST00000549414 MAPK14Q16539 360 aa15.19■□□□□ 0.02
CUX1-213ENST00000549414 GXYLT1Q4G148 440 aa15.19■□□□□ 0.02
CUX1-213ENST00000549414 ALG10Q5BKT4 473 aa15.19■□□□□ 0.02
CUX1-213ENST00000549414 SLC25A24Q6NUK1 477 aa15.19■□□□□ 0.02
CUX1-213ENST00000549414 TBC1D20Q96BZ9 403 aa15.19■□□□□ 0.02
CUX1-213ENST00000549414 MRGPRX3Q96LB0 322 aa15.19■□□□□ 0.02
CUX1-213ENST00000549414 C1QTNF2Q9BXJ5 285 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms