RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 NXF5Q9H1B4 397 aaKnown RBP3.13□□□□□ -1.91
VPS29-205ENST00000548539 IKZF5Q9H5V7 419 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 SMPD3Q9NY59 655 aaPredicted RBP3.13□□□□□ -1.91
VPS29-205ENST00000548539 SENP1Q9P0U3 644 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 ABCD2Q9UBJ2 740 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 NAALAD2Q9Y3Q0 740 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 WDR45Q9Y484 360 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 OARD1Q9Y530 152 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 PPIAL4AQ9Y536 164 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 USP16Q9Y5T5 823 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 ALG6Q9Y672 507 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 KIF16BQ96L93 1317 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 CACNA1FO60840 1977 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 POGZQ7Z3K3 1410 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 A0A1W2PQ72 361 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 METTL21EPA6NDL7 271 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 G3V4G9 280 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 LATO43561 262 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 ADCY5O95622 1261 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 PGK1P00558 417 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 ALOX5P09917 674 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 H2AFZP0C0S5 128 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 PDHBP11177 359 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 TBXA2RP21731 343 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 GLRA2P23416 452 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 GDF1P27539 372 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 OTX2P32243 289 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 DHPSP49366 369 aaPredicted RBP3.12□□□□□ -1.91
VPS29-205ENST00000548539 GBX2P52951 348 aaPredicted RBP3.12□□□□□ -1.91
VPS29-205ENST00000548539 LMO4P61968 165 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 CD47Q08722 323 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 ASAH1Q13510 395 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 MXD4Q14582 209 aaPredicted RBP3.12□□□□□ -1.91
VPS29-205ENST00000548539 LAGE3Q14657 143 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 SYPL1Q16563 259 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 SLC5A12Q1EHB4 618 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 TIGITQ495A1 244 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 GLYR1Q49A26 553 aaPredicted RBP3.12□□□□□ -1.91
VPS29-205ENST00000548539 PAN3Q58A45 887 aaKnown RBP3.12□□□□□ -1.91
VPS29-205ENST00000548539 MARC1Q5VT66 337 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 ZNF774Q6NX45 483 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 CASC1Q6TDU7 716 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 C2orf66Q6UXQ4 117 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 CDC20BQ86Y33 519 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 FOXN4Q96NZ1 517 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 OR5B2Q96R09 309 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 EDEM2Q9BV94 578 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 LCMT1Q9UIC8 334 aa3.12□□□□□ -1.91
VPS29-205ENST00000548539 COL5A2P05997 1499 aaPredicted RBP3.11□□□□□ -1.91
VPS29-205ENST00000548539 IGHV3-35A0A0C4DH35 117 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 MBLAC1A4D2B0 266 aaPredicted RBP3.11□□□□□ -1.91
VPS29-205ENST00000548539 ZNF254O75437 659 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 LRATO95237 230 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 IGHDP01880 384 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 PGCP20142 388 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 PCMT1P22061 227 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 CALB2P22676 271 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 FASP25445 335 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 MDH2P40926 338 aaKnown RBP3.11□□□□□ -1.91
VPS29-205ENST00000548539 ACTR1AP61163 376 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 UBE2HP62256 183 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 SPIBQ01892 262 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 IL24Q13007 206 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 NDUFA9Q16795 377 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 GSG1Q2KHT4 349 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 MAJINQ3KP22 176 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 SLC22A10Q63ZE4 541 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 CGB2Q6NT52 195 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 PMF1Q6P1K2 205 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 SERPINA9Q86WD7 417 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 TMEM123Q8N131 208 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 SLC39A11Q8N1S5 342 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 CD177Q8N6Q3 437 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 ANKFN1Q8N957 763 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 FBXO30Q8TB52 745 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 TRMT10AQ8TBZ6 339 aaKnown RBP3.11□□□□□ -1.91
VPS29-205ENST00000548539 IL1F10Q8WWZ1 152 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 SH3YL1Q96HL8 342 aaPredicted RBP3.11□□□□□ -1.91
VPS29-205ENST00000548539 AMDHD1Q96NU7 426 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 CYP2S1Q96SQ9 504 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 OMDQ99983 421 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 CAB39LQ9H9S4 337 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 SLC17A5Q9NRA2 495 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 DPM3Q9P2X0 92 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 ZNF107Q9UII5 783 aaPredicted RBP3.11□□□□□ -1.91
VPS29-205ENST00000548539 PTBP2Q9UKA9 531 aaKnown RBP3.11□□□□□ -1.91
VPS29-205ENST00000548539 MRPS7Q9Y2R9 242 aaKnown RBP3.11□□□□□ -1.91
VPS29-205ENST00000548539 KDRP35968 1356 aa3.11□□□□□ -1.91
VPS29-205ENST00000548539 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.1□□□□□ -1.91
VPS29-205ENST00000548539 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.1□□□□□ -1.91
VPS29-205ENST00000548539 FAM220BPB1ANY3 271 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 PRRG1O14668 218 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 MSH4O15457 936 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 RIPK2O43353 540 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 BCL2L11O43521 198 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 SPAG6O75602 509 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 GPX5O75715 221 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 RHOBTB1O94844 696 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 SERPINA2P20848 420 aa3.1□□□□□ -1.91
VPS29-205ENST00000548539 PTGER3P43115 390 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms