RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 ING1Q9UK53 422 aaPredicted RBP13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 TRAF6Q9Y4K3 522 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 V9GYY5 206 aaPredicted RBP13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 LOC105371242A0A075B767 164 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 IGHV3-15A0A0B4J1V0 119 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 CCDC151A5D8V7 595 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 ATP6V1G2-DDX39BF2Z307 99 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 RIPK2O43353 540 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 RAD51DO75771 328 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 PRKD3O94806 890 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 IL33O95760 270 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 INHBAP08476 426 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 PABPC4LP0CB38 370 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 ZNF17P17021 662 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 COX5AP20674 150 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 SFTPDP35247 375 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 SLC12A2P55011 1212 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 POU4F1Q01851 419 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 CSTF3Q12996 717 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 CUL3Q13618 768 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 SLC46A3Q7Z3Q1 461 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 GTPBP8Q8N3Z3 284 aaPredicted RBP13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 AENQ8WTP8 325 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 TMEM186Q96B77 213 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 REXO5Q96IC2 774 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 CXorf36Q9H7Y0 433 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 ARGLU1Q9NWB6 273 aaPredicted RBP13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 OR10H1Q9Y4A9 318 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 PPIAL4AQ9Y536 164 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 PCDHA9Q9Y5H5 950 aa13.45□□□□□ -0.26
CLSTN3-216ENST00000545663 EXOC1LA0A1B0GW35 172 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 FAM95CA0A1B0GW59 222 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 GOLGA6L10A6NI86 522 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 B4DSR2 109 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 SNUPNO95149 360 aaKnown RBP13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 FAM153BP0C7A2 387 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 DAOP14920 347 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 ENPP1P22413 925 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 FAM153CQ494X1 144 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 ZNF628Q5EBL2 1059 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 SH2D4BQ5SQS7 431 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 FAHD2BQ6P2I3 314 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 FCRLAQ7L513 359 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 LRRC70Q7Z2Q7 622 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 CROCCP2Q86T23 111 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 ZC3HC1Q86WB0 502 aaKnown RBP13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 LILRA2Q8N149 483 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 ZCCHC24Q8N2G6 241 aaKnown RBP13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 MREGQ8N565 214 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 PDPRQ8NCN5 879 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 POC1BQ8TC44 478 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 UBLCP1Q8WVY7 318 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 CNRIP1Q96F85 164 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 FAHD2AQ96GK7 314 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 PKNOX2Q96KN3 472 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 ZNF681Q96N22 645 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 RBBP8Q99708 897 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 DERL2Q9GZP9 239 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 POPDC3Q9HBV1 291 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 ZNF180Q9UJW8 692 aa13.44□□□□□ -0.26
CLSTN3-216ENST00000545663 IGLV3-32A0A0A0MS00 114 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 LYNX1G3V0Z9 82 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 IGHV3-9P01782 118 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 LYNX1P0DP58 116 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 PIK3CGP48736 1102 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 SNRPD2P62316 118 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 MRPS22P82650 360 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 SRSF4Q08170 494 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 SLC29A2Q14542 456 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 OCLNQ16625 522 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 CDKL4Q5MAI5 379 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 CPTPQ5TA50 214 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 CCDC116Q8IYX3 515 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 KLHL29Q96CT2 875 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 KLHL15Q96M94 604 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 LRRC37BQ96QE4 947 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 SUCNR1Q9BXA5 334 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 FAM120CQ9NX05 1096 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 ABCG2Q9UNQ0 655 aa13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 HEATR1Q9H583 2144 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-216ENST00000545663 TENM3Q9P273 2699 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 EFNA2O43921 213 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 ANGPTL1O95841 491 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 VSIG8P0DPA2 414 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 MANFP55145 182 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 RASA2Q15283 850 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 CPSF6Q16630 551 aaKnown RBP eCLIP13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 CCNYL2Q5T2Q4 361 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 PDSS1Q5T2R2 415 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 SSX8Q7RTT4 187 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 SPATA19Q7Z5L4 167 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 GSPT2Q8IYD1 628 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 OR9A2Q8NGT5 310 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 C22orf15Q8WYQ4 148 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 DUX5Q96PT3 197 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 GPR22Q99680 433 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 MRPL1Q9BYD6 325 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 CAB39LQ9H9S4 337 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 FKRPQ9H9S5 495 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 NTMQ9P121 344 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms