RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 H0YAE9 185 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 GTPBP1O00178 669 aaKnown RBP19.3■□□□□ 0.68
VPS28-208ENST00000527797 GFRA3O60609 400 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 MITFO75030 526 aaPredicted RBP19.3■□□□□ 0.68
VPS28-208ENST00000527797 CELA2AP08217 269 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 ENDOUP21128 410 aaKnown RBP19.3■□□□□ 0.68
VPS28-208ENST00000527797 HTR2AP28223 471 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 SEC23BQ15437 767 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 IGF2-ASQ6U949 168 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 GDF7Q7Z4P5 450 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 GALNT5Q7Z7M9 940 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 RAB43Q86YS6 212 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 SLC15A4Q8N697 577 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 IL22RA1Q8N6P7 574 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 GATSQ8NAP1 163 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 TOR1AIP2Q8NFQ8 470 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 OR9Q2Q8NGE9 314 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 ZFHX2Q9C0A1 2572 aaPredicted RBP19.3■□□□□ 0.68
VPS28-208ENST00000527797 CUL9Q8IWT3 2517 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 ALG1L2C9J202 215 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 OR10H3O60404 316 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 ZNF354AO60765 605 aaPredicted RBP19.29■□□□□ 0.68
VPS28-208ENST00000527797 OR2J2O76002 312 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 UBL4AP11441 157 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 ACAA2P42765 397 aaKnown RBP19.29■□□□□ 0.68
VPS28-208ENST00000527797 TMED10P49755 219 aaKnown RBP19.29■□□□□ 0.68
VPS28-208ENST00000527797 CD226Q15762 336 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 NDUFAF6Q330K2 333 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 APOOLQ6UXV4 268 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 AQP11Q8NBQ7 271 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 ZNF555Q8NEP9 628 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 TMCO6Q96DC7 493 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 CNBD2Q96M20 576 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 MBOAT4Q96T53 435 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 TBL1XR1Q9BZK7 514 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 TRIM2Q9C040 744 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 P4HTMQ9NXG6 502 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 FBXL4Q9UKA2 621 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 SLC7A7Q9UM01 511 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 SDK2Q58EX2 2172 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 ZNF264O43296 627 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 RPSAP08865 295 aaKnown RBP19.29■□□□□ 0.68
VPS28-208ENST00000527797 CLK3P49761 638 aaKnown RBP19.29■□□□□ 0.68
VPS28-208ENST00000527797 ADARB1P78563 741 aaKnown RBP19.29■□□□□ 0.68
VPS28-208ENST00000527797 TTC23Q5W5X9 447 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 ZNF770Q6IQ21 691 aaPredicted RBP19.29■□□□□ 0.68
VPS28-208ENST00000527797 ZNF613Q6PF04 617 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 NUP54Q7Z3B4 507 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 CHERPQ8IWX8 916 aaKnown RBP19.29■□□□□ 0.68
VPS28-208ENST00000527797 MARVELD2Q8N4S9 558 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 POGLUT1Q8NBL1 392 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 FAM71CQ8NEG0 241 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 ANKRD60Q9BZ19 345 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 ASCL3Q9NQ33 180 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 EXOSC3Q9NQT5 275 aaKnown RBP19.29■□□□□ 0.68
VPS28-208ENST00000527797 PAPOLBQ9NRJ5 636 aaKnown RBP19.29■□□□□ 0.68
VPS28-208ENST00000527797 FAM118AQ9NWS6 357 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 MGAT4BQ9UQ53 548 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 POFUT2Q9Y2G5 429 aa19.29■□□□□ 0.68
VPS28-208ENST00000527797 NDUFB5O43674 189 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 FADS1O60427 444 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 GASTP01350 101 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 THY1P04216 161 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 CBLP22681 906 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 EVI2BP34910 448 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 RYKP34925 604 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 FBXW4P57775 412 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 KCNAB2Q13303 367 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 IL10RAQ13651 578 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 PDK3Q15120 406 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 RRM2BQ7LG56 351 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 MRGPREQ86SM8 312 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 MARCH3Q86UD3 253 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 DTX1Q86Y01 620 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 OR4K5Q8NGD3 323 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 KIAA1143Q96AT1 154 aaPredicted RBP19.28■□□□□ 0.68
VPS28-208ENST00000527797 NIPSNAP1Q9BPW8 284 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 RIBC2Q9H4K1 309 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 CARD8Q9Y2G2 431 aa19.28■□□□□ 0.68
VPS28-208ENST00000527797 MRPS18BQ9Y676 258 aaKnown RBP19.28■□□□□ 0.68
VPS28-208ENST00000527797 ADAM11O75078 769 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 ADAP00813 363 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 FBXO45P0C2W1 286 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 SKP2Q13309 424 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 LYPD8Q6UX82 237 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 ZNF730Q6ZMV8 503 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 NKAIN4Q8IVV8 208 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 LSMEM1Q8N8F7 131 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 OR5M3Q8NGP4 307 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 ACOT11Q8WXI4 607 aaPredicted RBP19.27■□□□□ 0.68
VPS28-208ENST00000527797 TTC9Q92623 222 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 HGDQ93099 445 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 RASL10BQ96S79 203 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 LAT2Q9GZY6 243 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 RPS6KB2Q9UBS0 482 aa19.27■□□□□ 0.68
VPS28-208ENST00000527797 A0A087WUU8 490 aa19.26■□□□□ 0.67
VPS28-208ENST00000527797 EIF4E2O60573 245 aaKnown RBP19.26■□□□□ 0.67
VPS28-208ENST00000527797 ANGPTL1O95841 491 aa19.26■□□□□ 0.67
VPS28-208ENST00000527797 POU2F1P14859 743 aa19.26■□□□□ 0.67
VPS28-208ENST00000527797 IFNGR2P38484 337 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms