RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 EIF2B1Q14232 305 aaKnown RBP6.08□□□□□ -1.44
LSM1-202ENST00000520286 TATDN3Q17R31 274 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 RABGAP1LQ5R372 815 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 SPATA46Q5T0L3 261 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 CENPPQ6IPU0 288 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 PRR5LQ6MZQ0 368 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 APOOLQ6UXV4 268 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 Q8NBF4 154 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 SHC3Q92529 594 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 ITFG2Q969R8 447 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 RAB3CQ96E17 227 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 DHTKD1Q96HY7 919 aaPredicted RBP6.08□□□□□ -1.44
LSM1-202ENST00000520286 HSD17B14Q9BPX1 270 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 FAM173AQ9BQD7 235 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 FGFBP2Q9BYJ0 223 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 RNF41Q9H4P4 317 aaPredicted RBP6.08□□□□□ -1.44
LSM1-202ENST00000520286 GPN2Q9H9Y4 310 aaPredicted RBP6.08□□□□□ -1.44
LSM1-202ENST00000520286 NUDT4Q9NZJ9 180 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 ZNF346Q9UL40 294 aaKnown RBP6.08□□□□□ -1.44
LSM1-202ENST00000520286 MON2Q7Z3U7 1717 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 TCF20Q9UGU0 1960 aaKnown RBP6.07□□□□□ -1.44
LSM1-202ENST00000520286 CEMIPQ8WUJ3 1361 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 VPS37CA5D8V6 355 aaPredicted RBP6.07□□□□□ -1.44
LSM1-202ENST00000520286 PPIAL4DF5H284 164 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.07□□□□□ -1.44
LSM1-202ENST00000520286 CASKO14936 926 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 ZSCAN12O43309 604 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 ERLIN1O75477 346 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 TM7SF2O76062 418 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 ZNF10P21506 573 aaPredicted RBP6.07□□□□□ -1.44
LSM1-202ENST00000520286 UGT1A4P22310 534 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 PPP2R1BP30154 601 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 RGS4P49798 205 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 ZNF85Q03923 595 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 IL24Q13007 206 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 SELPLGQ14242 412 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 HACD2Q6Y1H2 254 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 TMEM184AQ6ZMB5 413 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 USP50Q70EL3 339 aaPredicted RBP6.07□□□□□ -1.44
LSM1-202ENST00000520286 STEAP2Q8NFT2 490 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 AKR1E2Q96JD6 320 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 SENP8Q96LD8 212 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 FAM210AQ96ND0 272 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 RPP25Q9BUL9 199 aaKnown RBP6.07□□□□□ -1.44
LSM1-202ENST00000520286 ESM1Q9NQ30 184 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 OR10H1Q9Y4A9 318 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 MAB21L2Q9Y586 359 aa6.07□□□□□ -1.44
LSM1-202ENST00000520286 CDHR2Q9BYE9 1310 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 IGLV4-3A0A075B6K6 122 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 C15orf38-AP3S2A0A0A6YYH1 394 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 MFSD2BA6NFX1 497 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 N4BP1O75113 896 aaKnown RBP6.06□□□□□ -1.44
LSM1-202ENST00000520286 NUDT14O95848 222 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 OPN1MWP04001 364 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 OPN1MW2P0DN77 364 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 OPN1MW3P0DN78 364 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 ANXA3P12429 323 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 PRKAR2BP31323 418 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 SLC1A4P43007 532 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 MNAT1P51948 309 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 CASP8Q14790 479 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 ATL3Q6DD88 541 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 ZNF530Q6P9A1 599 aaPredicted RBP6.06□□□□□ -1.44
LSM1-202ENST00000520286 BTNL3Q6UXE8 466 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 STOX1Q6ZVD7 989 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 DPY19L4Q7Z388 723 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 NBPF5PQ86XG9 351 aaPredicted RBP6.06□□□□□ -1.44
LSM1-202ENST00000520286 RAET1EQ8TD07 263 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 RLN3Q8WXF3 142 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 GTF3AQ92664 365 aaKnown RBP6.06□□□□□ -1.44
LSM1-202ENST00000520286 TADA1Q96BN2 335 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 NAT10Q9H0A0 1025 aaKnown RBP6.06□□□□□ -1.44
LSM1-202ENST00000520286 EXOSC1Q9Y3B2 195 aaKnown RBP6.06□□□□□ -1.44
LSM1-202ENST00000520286 NOTCH4Q99466 2003 aa6.06□□□□□ -1.44
LSM1-202ENST00000520286 GRIN2DO15399 1336 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 LAMA4Q16363 1823 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 PPIAL4CA0A0B4J2A2 164 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 GSAPA4D1B5 854 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 GOLGA6L4A6NEF3 574 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 DUX1O43812 170 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 BCAS1O75363 584 aaPredicted RBP6.05□□□□□ -1.44
LSM1-202ENST00000520286 NEBLO76041 1014 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 MT-ND1P03886 318 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 HOXB7P09629 217 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 PPIAL4GP0DN37 164 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 HSD17B1P14061 328 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 SSR1P43307 286 aaKnown RBP6.05□□□□□ -1.44
LSM1-202ENST00000520286 ATP4BP51164 291 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 CRIP2P52943 208 aaPredicted RBP6.05□□□□□ -1.44
LSM1-202ENST00000520286 PJVKQ0ZLH3 352 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 RIPK1Q13546 671 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 SIX1Q15475 284 aaPredicted RBP6.05□□□□□ -1.44
LSM1-202ENST00000520286 UBE2V2Q15819 145 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 RNF130Q86XS8 419 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 CEP112Q8N8E3 955 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 KRTAP4-2Q9BYR5 136 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 PUS3Q9BZE2 481 aaKnown RBP6.05□□□□□ -1.44
LSM1-202ENST00000520286 OCR1Q9BZK8 76 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 SLC25A51Q9H1U9 297 aa6.05□□□□□ -1.44
LSM1-202ENST00000520286 MEAF6Q9HAF1 191 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms