RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 ATP5OP48047 213 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 KCNJ1P48048 391 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 STX1BP61266 288 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 ERVK-16P61578 105 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 DR1Q01658 176 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 GBE1Q04446 702 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 CD300CQ08708 224 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 C2orf54Q08AI8 447 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 SNX1Q13596 522 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 PDGFRLQ15198 375 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 ZNF77Q15935 545 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 TYSND1Q2T9J0 566 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 PARP15Q460N3 678 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 FAM78AQ5JUQ0 283 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 NCBP2-AS2Q69YL0 99 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 C8orf74Q6P047 294 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 RFWD3Q6PCD5 774 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 OTOAQ7RTW8 1153 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 SLC25A42Q86VD7 318 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 CDKL3Q8IVW4 592 aaPredicted RBP4.33□□□□□ -1.72
CCDC39-202ENST00000471307 MFSD6LQ8IWD5 586 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 BBS7Q8IWZ6 715 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 ALLCQ8N6M5 410 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 FIBINQ8TAL6 211 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 DDI1Q8WTU0 396 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 TFB1MQ8WVM0 346 aaKnown RBP4.33□□□□□ -1.72
CCDC39-202ENST00000471307 ING5Q8WYH8 240 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 ELSPBP1Q96BH3 223 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 OTUB1Q96FW1 271 aaPredicted RBP4.33□□□□□ -1.72
CCDC39-202ENST00000471307 OLFM3Q96PB7 478 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 TSGA13Q96PP4 275 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 VAT1Q99536 393 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 MLPHQ9BV36 600 aaPredicted RBP4.33□□□□□ -1.72
CCDC39-202ENST00000471307 DDX47Q9H0S4 455 aaKnown RBP4.33□□□□□ -1.72
CCDC39-202ENST00000471307 RAB17Q9H0T7 212 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 LINC00597Q9H2U6 94 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 ZFP14Q9HCL3 533 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 ETNK2Q9NVF9 386 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 HACD3Q9P035 362 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 DNAJB9Q9UBS3 223 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 DNPEPQ9ULA0 475 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 NEU3Q9UQ49 428 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 CCL26Q9Y258 94 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 UTP11Q9Y3A2 253 aaKnown RBP4.33□□□□□ -1.72
CCDC39-202ENST00000471307 SNX10Q9Y5X0 201 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 MYO18AQ92614 2054 aaKnown RBP4.33□□□□□ -1.72
CCDC39-202ENST00000471307 CHD5Q8TDI0 1954 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 HTR3EA5X5Y0 456 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 ZSCAN5CA6NGD5 496 aaPredicted RBP4.32□□□□□ -1.72
CCDC39-202ENST00000471307 KLLNB2CW77 178 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 SGK1O00141 431 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 TRDMT1O14717 391 aaKnown RBP4.32□□□□□ -1.72
CCDC39-202ENST00000471307 NDC80O14777 642 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 RAD51CO43502 376 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 TLX2O43763 284 aaPredicted RBP4.32□□□□□ -1.72
CCDC39-202ENST00000471307 MFSD11O43934 449 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 CYTIPO60759 359 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 ECI2O75521 394 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 LUC7L3O95232 432 aaKnown RBP4.32□□□□□ -1.72
CCDC39-202ENST00000471307 KRT14P02533 472 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 FOSL2P15408 326 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 PSMC3P17980 439 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 IFNAR2P48551 515 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 PLK1P53350 603 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 OR1D5P58170 312 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 RPS24P62847 133 aaKnown RBP4.32□□□□□ -1.72
CCDC39-202ENST00000471307 DLK1P80370 383 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 GNA12Q03113 381 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 RBPJQ06330 500 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 ACTN3Q08043 901 aaPredicted RBP4.32□□□□□ -1.72
CCDC39-202ENST00000471307 IL10RBQ08334 325 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 PPIDQ08752 370 aaKnown RBP4.32□□□□□ -1.72
CCDC39-202ENST00000471307 RPA4Q13156 261 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 DMC1Q14565 340 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 PPP1R7Q15435 360 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 MEP1BQ16820 701 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 ANKRD20A4Q4UJ75 823 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 ANKRD20A2Q5SQ80 823 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 TEX35Q5T0J7 233 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 ANKRD20A1Q5TYW2 823 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 ANKRD20A3Q5VUR7 823 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 DUPD1Q68J44 220 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 TTC27Q6P3X3 843 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 RNF130Q86XS8 419 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 TMEM25Q86YD3 366 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 IFT20Q8IY31 132 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 DEFB123Q8N688 67 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 EIF1ADQ8N9N8 165 aaKnown RBP4.32□□□□□ -1.72
CCDC39-202ENST00000471307 BBOF1Q8ND07 529 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 CCNYQ8ND76 341 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 HTR3CQ8WXA8 447 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.32□□□□□ -1.72
CCDC39-202ENST00000471307 MR1Q95460 341 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 LRRC45Q96CN5 670 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 ZNF597Q96LX8 424 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 QKIQ96PU8 341 aaKnown RBP eCLIP4.32□□□□□ -1.72
CCDC39-202ENST00000471307 XPO6Q96QU8 1125 aaKnown RBP4.32□□□□□ -1.72
CCDC39-202ENST00000471307 ERP44Q9BS26 406 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 SPXQ9BT56 116 aa4.32□□□□□ -1.72
CCDC39-202ENST00000471307 TMEM121Q9BTD3 319 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms