RNA–Protein interactions for RNA: ENST00000454542.5

HDAC4-205, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-205ENST00000454542 MED17Q9NVC6 651 aa12.82□□□□□ -0.36
HDAC4-205ENST00000454542 PLEKHB1Q9UF11 243 aaPredicted RBP12.82□□□□□ -0.36
HDAC4-205ENST00000454542 MKLN1Q9UL63 735 aa12.82□□□□□ -0.36
HDAC4-205ENST00000454542 L3MBTL1Q9Y468 752 aa12.82□□□□□ -0.36
HDAC4-205ENST00000454542 KLF2Q9Y5W3 355 aaPredicted RBP12.82□□□□□ -0.36
HDAC4-205ENST00000454542 A1L4Q6 167 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 MBD3L4A6NDZ8 208 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-205ENST00000454542 MBD3L3A6NE82 208 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-205ENST00000454542 MBD3L5A6NJ08 208 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-205ENST00000454542 CD8B2A6NJW9 211 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 H3BNH8 94 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 EIF4E2O60573 245 aaKnown RBP12.81□□□□□ -0.36
HDAC4-205ENST00000454542 ANP32DO95626 131 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 EPPINO95925 133 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 LINGO3P0C6S8 592 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 UBL4AP11441 157 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 ETFAP13804 333 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 NCF2P19878 526 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-205ENST00000454542 P2RX1P51575 399 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 ARFIP2P53365 341 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 DLX5P56178 289 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 CHRNEQ04844 493 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 GPR68Q15743 365 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 SYPL1Q16563 259 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 RAET1LQ5VY80 246 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 NSUN5P2Q63ZY6 315 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 ENPP6Q6UWR7 440 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 RETREG3Q86VR2 466 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 LACC1Q8IV20 430 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 B4GALNT2Q8NHY0 566 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 MBD3L2Q8NHZ7 208 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-205ENST00000454542 PHOSPHO1Q8TCT1 267 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 ZBTB8AQ96BR9 441 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 SH3YL1Q96HL8 342 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-205ENST00000454542 PIGQQ9BRB3 760 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 VAPAQ9P0L0 249 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 SLAMF8Q9P0V8 285 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 CLCF1Q9UBD9 225 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 P2RX2Q9UBL9 471 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 CAMK2AQ9UQM7 478 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 RPH3AQ9Y2J0 694 aaPredicted RBP12.81□□□□□ -0.36
HDAC4-205ENST00000454542 CACNA1CQ13936 2221 aa12.81□□□□□ -0.36
HDAC4-205ENST00000454542 FLNBO75369 2602 aaKnown RBP12.8□□□□□ -0.36
HDAC4-205ENST00000454542 UTP20O75691 2785 aaKnown RBP12.8□□□□□ -0.36
HDAC4-205ENST00000454542 A0A0G2JNJ9 132 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 TOXO94900 526 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 CLDN14O95500 239 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 NTN1O95631 604 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 PEPDP12955 493 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 CEACAM8P31997 349 aaPredicted RBP12.8□□□□□ -0.36
HDAC4-205ENST00000454542 PGM1P36871 562 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 CLDN15P56746 228 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 DSTNP60981 165 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 HPCAP84074 193 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 RGNQ15493 299 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 SLC25A53Q5H9E4 307 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 DLEU7Q6UYE1 221 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 C10orf111Q8N326 155 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 POC1BQ8TC44 478 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 ASB5Q8WWX0 329 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 RND1Q92730 232 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 PMM1Q92871 262 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 NPAS1Q99742 590 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 TUBA1CQ9BQE3 449 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 CPPED1Q9BRF8 314 aaPredicted RBP12.8□□□□□ -0.36
HDAC4-205ENST00000454542 RAD21L1Q9H4I0 556 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 SAR1AQ9NR31 198 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 THUMPD1Q9NXG2 353 aaKnown RBP12.8□□□□□ -0.36
HDAC4-205ENST00000454542 Q9UFV3 132 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 LEF1Q9UJU2 399 aaPredicted RBP12.8□□□□□ -0.36
HDAC4-205ENST00000454542 RNF6Q9Y252 685 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 VDAC3Q9Y277 283 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 SLC35A3Q9Y2D2 325 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 PCNX1Q96RV3 2341 aa12.8□□□□□ -0.36
HDAC4-205ENST00000454542 DOCK7Q96N67 2140 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 AGAP5A6NIR3 686 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 SHISA8B8ZZ34 492 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 FAM47E-STBD1D6RA91 191 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 CLIC1O00299 241 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 ZNF264O43296 627 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 BCAS1O75363 584 aaPredicted RBP12.79□□□□□ -0.36
HDAC4-205ENST00000454542 TFPTP0C1Z6 253 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 POU3F2P20265 443 aaPredicted RBP12.79□□□□□ -0.36
HDAC4-205ENST00000454542 TCEA1P23193 301 aaKnown RBP12.79□□□□□ -0.36
HDAC4-205ENST00000454542 PPIBP23284 216 aaKnown RBP12.79□□□□□ -0.36
HDAC4-205ENST00000454542 ELK4P28324 431 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 CHRNB4P30926 498 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 TIMP3P35625 211 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 STARP49675 285 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 RNF144AP50876 292 aaPredicted RBP12.79□□□□□ -0.36
HDAC4-205ENST00000454542 PMPCAQ10713 525 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 SF3B4Q15427 424 aaKnown RBP eCLIP12.79□□□□□ -0.368e-6■■□□□ 11.6
HDAC4-205ENST00000454542 NDUFAF6Q330K2 333 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 GPAT3Q53EU6 434 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 COQ5Q5HYK3 327 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 PRAMEF8Q5VWM4 474 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 PRAMEF7Q5VXH5 474 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 GGNQ86UU5 652 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 METTL25Q8N6Q8 603 aa12.79□□□□□ -0.36
HDAC4-205ENST00000454542 ZNF614Q8N883 585 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms