RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 EPHX2P34913 555 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 ALDH3B1P43353 468 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 SLC6A8P48029 635 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 ATP5OP48047 213 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 MNAT1P51948 309 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 GTF2A1P52655 376 aaPredicted RBP3.6□□□□□ -1.83
VPS29-202ENST00000447578 CDH6P55285 790 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 GPX6P59796 221 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 CCNA1P78396 465 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 NME3Q13232 169 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 RFTN1Q14699 578 aaPredicted RBP3.6□□□□□ -1.83
VPS29-202ENST00000447578 SNCBQ16143 134 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 KLHL38Q2WGJ6 581 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 C14orf177Q52M58 125 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 AGKQ53H12 422 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 LCE3CQ5T5A8 94 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 CAPN13Q6MZZ7 669 aaPredicted RBP3.6□□□□□ -1.83
VPS29-202ENST00000447578 CEACAM20Q6UY09 585 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 GDPD4Q6W3E5 623 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 C3orf62Q6ZUJ4 267 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 FOXL2NBQ6ZUU3 175 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 USP50Q70EL3 339 aaPredicted RBP3.6□□□□□ -1.83
VPS29-202ENST00000447578 ACOT1Q86TX2 421 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 NFE4Q86UQ8 179 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 C4orf33Q8N1A6 199 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 ZNF843Q8N446 348 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 TEX26Q8N6G2 289 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 BCORP1Q8N888 145 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 FBXO36Q8NEA4 188 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 OR4C3Q8NH37 302 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 OR1L3Q8NH93 324 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 PPTC7Q8NI37 304 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 CD99L2Q8TCZ2 262 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 PYROXD1Q8WU10 500 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 APOBEC4Q8WW27 367 aaKnown RBP3.6□□□□□ -1.83
VPS29-202ENST00000447578 HPSE2Q8WWQ2 592 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 NCLNQ969V3 563 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 TMEM45BQ96B21 275 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 FAF2Q96CS3 445 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 MRPL45Q9BRJ2 306 aaKnown RBP3.6□□□□□ -1.83
VPS29-202ENST00000447578 CNPY3Q9BT09 278 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 PITPNM3Q9BZ71 974 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 C3orf14Q9HBI5 128 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 FARSBQ9NSD9 589 aaKnown RBP3.6□□□□□ -1.83
VPS29-202ENST00000447578 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.6□□□□□ -1.83
VPS29-202ENST00000447578 FAM49BQ9NUQ9 324 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 GPATCH2LQ9NWQ4 482 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 EURLQ9NYK6 297 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 EXTL2Q9UBQ6 330 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 BARX2Q9UMQ3 279 aaPredicted RBP3.6□□□□□ -1.83
VPS29-202ENST00000447578 ARL2BPQ9Y2Y0 163 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 C2CD2Q9Y426 696 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 ATG4BQ9Y4P1 393 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 MMP24Q9Y5R2 645 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 WDR90Q96KV7 1748 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 CLUHO75153 1309 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 LOC285556D6RIA3 1793 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 COL11A1P12107 1806 aaPredicted RBP3.6□□□□□ -1.83
VPS29-202ENST00000447578 PARP14Q460N5 1801 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 RLFQ13129 1914 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 MYH10P35580 1976 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 A0A0G2JMZ2 1700 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 SIP14410 1827 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 CCL15-CCL14A0A0B4J2E2 113 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 IGHV4-61A0A0C4DH41 118 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 A0A1B0GUA9 196 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 GOLGA8RI6L899 631 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 APOC4-APOC2K7ER74 178 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 KLF11O14901 512 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 P2RX6O15547 441 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 HCRTO43612 131 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 CIDEAO60543 219 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 PIAS1O75925 651 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 SNAI1O95863 264 aaPredicted RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 IGHV4-59P01825 116 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 CRYAAP02489 173 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 APOC2P02655 101 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 GPIP06744 558 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 THRBP10828 461 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 SLC2A2P11168 524 aaPredicted RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 NQO1P15559 274 aaKnown RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 RPL35AP18077 110 aaKnown RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 GPX3P22352 226 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 ADORA2BP29275 332 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 SDC4P31431 198 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 RPA3P35244 121 aaPredicted RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 PCK1P35558 622 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 ELK3P41970 407 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 LIMK2P53671 638 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 NCALDP61601 193 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 YWHAGP61981 247 aaKnown RBP eCLIP3.59□□□□□ -1.83
VPS29-202ENST00000447578 BTG1P62324 171 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 KCNJ2P63252 427 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 ELF3P78545 371 aaPredicted RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 INCA1Q0VD86 236 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 DNAJC3Q13217 504 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 XRCC4Q13426 336 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 TFDP2Q14188 446 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 DPYSL3Q14195 570 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 EXOSC7Q15024 291 aaKnown RBP3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms