RNA–Protein interactions for RNA: ENST00000406454.7

CACNA1C-222, Transcript of calcium voltage-gated channel subunit alpha1 C, human

APPRIS ALT2 TSL 5 BASIC

Gene CACNA1C, Length 7,590 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1C-222	ENST00000406454	ZSCAN1	Q8NBB4	408 aa		12.48	□□□□□ -0.41
CACNA1C-222	ENST00000406454	COQ8A	Q8NI60	647 aa		12.48	□□□□□ -0.41
CACNA1C-222	ENST00000406454	WFDC5	Q8TCV5	224 aa		12.48	□□□□□ -0.41
CACNA1C-222	ENST00000406454	GGH	Q92820	318 aa		12.48	□□□□□ -0.41
CACNA1C-222	ENST00000406454	FN3K	Q9H479	309 aa		12.48	□□□□□ -0.41
CACNA1C-222	ENST00000406454	CPNE5	Q9HCH3	593 aa		12.48	□□□□□ -0.41
CACNA1C-222	ENST00000406454	THAP10	Q9P2Z0	257 aa	Predicted RBP	12.48	□□□□□ -0.41
CACNA1C-222	ENST00000406454	ASB4	Q9Y574	426 aa		12.48	□□□□□ -0.41
CACNA1C-222	ENST00000406454	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	AGAP5	A6NIR3	686 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	AMY2A	P04746	511 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	THBS2	P35442	1172 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	GNMT	Q14749	295 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	OR1Q1	Q15612	314 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	TRIM46	Q7Z4K8	759 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	VRK3	Q8IV63	474 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	RHBDD1	Q8TEB9	315 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	INIP	Q9NRY2	104 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	LRIT1	Q9P2V4	623 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	GGT3P	A6NGU5	568 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	CAPNS1	P04632	268 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	MMP2	P08253	660 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	ARSK	Q6UWY0	536 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	ZNF704	Q6ZNC4	412 aa	Predicted RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	ZNF417	Q8TAU3	575 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	OR5B2	Q96R09	309 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	ADO	Q96SZ5	270 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	HDAC8	Q9BY41	377 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	IL37	Q9NZH6	218 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	UBQLN2	Q9UHD9	624 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	NUMBL	Q9Y6R0	609 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	UBFD1	O14562	309 aa	Known RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	DIRAS3	O95661	229 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	SNU13	P55769	128 aa	Known RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	KCNJ10	P78508	379 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	TBCE	Q15813	527 aa	Predicted RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	AADACL4	Q5VUY2	407 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	SHISA6	Q6ZSJ9	500 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	SPRED1	Q7Z699	444 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	SPPL3	Q8TCT6	385 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	RBM24	Q9BX46	236 aa	Known RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	OR2B2	Q9GZK3	357 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	HIF3A	Q9Y2N7	669 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	TRAV27	A0A087WT01	109 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	FAM227A	F5H4B4	570 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	HRG	P04196	525 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	ALPL	P05186	524 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	UGT2B7	P16662	529 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	HMGA1	P17096	107 aa	Known RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	REEP5	Q00765	189 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	RSU1	Q15404	277 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	LPAL2	Q16609	132 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	UNQ6126/PRO20091	Q6UXV3	157 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	ZC3H10	Q96K80	434 aa	Known RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	TMEM225B	P0DP42	221 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	PTGS2	P35354	604 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	AIMP2	Q13155	320 aa	Known RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	ARL6IP1	Q15041	203 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	GPR139	Q6DWJ6	353 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	CNIH2	Q6PI25	160 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	SFXN2	Q96NB2	322 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	WDR83	Q9BRX9	315 aa	Known RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	EPHX3	Q9H6B9	360 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	GMPR2	Q9P2T1	348 aa	Known RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	SRPX2	O60687	465 aa	Predicted RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	RAB38	P57729	211 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	SRY	Q05066	204 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	RIPPLY1	Q0D2K3	151 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	COL28A1	Q2UY09	1125 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	TMEM52B	Q4KMG9	183 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	BEST3	Q8N1M1	668 aa		12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	TREX2	Q9BQ50	279 aa	Predicted RBP	12.47	□□□□□ -0.41
CACNA1C-222	ENST00000406454	GFRA2	O00451	464 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	FBXO45	P0C2W1	286 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	TNFRSF17	Q02223	184 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	GLO1	Q04760	184 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	OR7A5	Q15622	319 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	PELI3	Q8N2H9	469 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	TES	Q9UGI8	421 aa	Known RBP	12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	AK6	Q9Y3D8	172 aa	Known RBP	12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	NWD2	Q9ULI1	1742 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	MECP2	P51608	486 aa	Known RBP	12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	CCDC58	Q4VC31	144 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	MEPCE	Q7L2J0	689 aa	Known RBP	12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	UBE2N	P61088	152 aa	Known RBP	12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	BCL7A	Q4VC05	210 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	BORA	Q6PGQ7	559 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	INTS14	Q96SY0	518 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	MS4A8	Q9BY19	250 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	ARL6	Q9H0F7	186 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	UBQLN4	Q9NRR5	601 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	FAIM	Q9NVQ4	179 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	PTRH2	Q9Y3E5	179 aa	Known RBP	12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	RAD1	O60671	282 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	UPK1B	O75841	260 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	CHRNE	Q04844	493 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	WBP2NL	Q6ICG8	309 aa		12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	12.46	□□□□□ -0.41
CACNA1C-222	ENST00000406454	KCNN3	Q9UGI6	736 aa		12.46	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms