RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CNIH2Q6PI25 160 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 FAM83HQ6ZRV2 1179 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 COG8Q96MW5 612 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 UHRF1Q96T88 793 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 NICN1Q9BSH3 213 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 GLTPQ9NZD2 209 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 DCDC2BA2VCK2 349 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 EGFP01133 1207 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 CHRNB1P11230 501 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 CSF2RAP15509 400 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 ZNF92Q03936 586 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 MOGSQ13724 837 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 C3orf38Q5JPI3 329 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 UBE2NLQ5JXB2 153 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 CCNJQ5T5M9 372 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 CRTC1Q6UUV9 634 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 PDZD3Q86UT5 571 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 TERB2Q8NHR7 220 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 NT5C3BQ969T7 300 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 LHPPQ9H008 270 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 OR51E2Q9H255 320 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 NGBQ9NPG2 151 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 TUBG2Q9NRH3 451 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 INIPQ9NRY2 104 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 CEBPZOSA8MTT3 80 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 FAM155AB1AL88 458 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 TRAPPC2LH3BP13 241 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 P2RX6O15547 441 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 GDF1P27539 372 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 VEGFCP49767 419 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 EMP2P54851 167 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 ERVPABLB-1P60509 514 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 SLC6A19Q695T7 634 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 ZMYND19Q96E35 227 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 IER3IP1Q9Y5U9 82 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 C10orf71Q711Q0 1435 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 LOC285095A0A1B0GVY8 99 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 NUDT21O43809 227 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 IDUAP35475 653 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 SH3BP2P78314 561 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 GPR176Q14439 515 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 SSX2Q16385 188 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 DEFB110Q30KQ9 67 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 GPRIN1Q7Z2K8 1008 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 APOOQ9BUR5 198 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 NKX2-4Q9H2Z4 354 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 CPNE5Q9HCH3 593 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 GJD2Q9UKL4 321 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 AK6Q9Y3D8 172 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 PTRH2Q9Y3E5 179 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 TNFSF12O43508 249 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 CER1O95813 267 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 ATP1B3P54709 279 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 ZNF551Q7Z340 670 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 IL17RDQ8NFM7 739 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 DYNLRB1Q9NP97 96 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 KLHL42Q9P2K6 505 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 NFS1Q9Y697 457 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 FAM171A2A8MVW0 826 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 UPK1BO75841 260 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 KITLGP21583 273 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 TECPR1Q7Z6L1 1165 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 IGFN1Q86VF2 1251 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 ZC3H3Q8IXZ2 948 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 RHBDD1Q8TEB9 315 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 ASB17Q8WXJ9 295 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 NXF5Q9H1B4 397 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 OR51B6Q9H340 312 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 FAM208AQ9UK61 1670 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 A0A1W2PS29 197 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 SGK494L7N484 410 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 STT3AP46977 705 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 KCMF1Q9P0J7 381 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 CHD4Q14839 1912 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 A6NL46 340 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 CD70P32970 193 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 TAS2R46P59540 309 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 RUNX2Q13950 521 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 C14orf28Q4W4Y0 310 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 CPOQ8IVL8 374 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 NAGSQ8N159 534 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 SAMD10Q9BYL1 202 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 TPSD1Q9BZJ3 242 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 GABRQQ9UN88 632 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 VDAC3Q9Y277 283 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 BRICD5Q6PL45 260 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 Q6ZSR6 202 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 ZNF761Q86XN6 746 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 MKXQ8IYA7 352 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 C16orf70Q9BSU1 422 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 OBP2BQ9NPH6 170 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 CNIH4Q9P003 139 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 CAMK2AQ9UQM7 478 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 DBHP09172 617 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 TRA2BP62995 288 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 IL13RA1P78552 427 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 SLC10A2Q12908 348 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 C18orf21Q32NC0 220 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 EXOSC6Q5RKV6 272 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms