RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 GDF7Q7Z4P5 450 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 SLC22A8Q8TCC7 542 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 OIT3Q8WWZ8 545 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 TBL1XR1Q9BZK7 514 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 RTN4RQ9BZR6 473 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 EVA1AQ9H8M9 152 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 KRT84Q9NSB2 600 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 OR5F1O95221 314 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 NTN1O95631 604 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 HPP00738 406 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 THY1P04216 161 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 ACAA2P42765 397 aaKnown RBP24.61■■□□□ 1.53
MSX1-201ENST00000382723 ZNF550Q7Z398 422 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 DHRSXQ8N5I4 330 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 ZNF559Q9BR84 538 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 FUZQ9BT04 418 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 GPN2Q9H9Y4 310 aaPredicted RBP24.61■■□□□ 1.53
MSX1-201ENST00000382723 SLC7A7Q9UM01 511 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 CARD8Q9Y2G2 431 aa24.61■■□□□ 1.53
MSX1-201ENST00000382723 H3BNH8 94 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 FAAHO00519 579 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 OIP5O43482 229 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 OR10H3O60404 316 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 ITGAMP11215 1152 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 POU2F1P14859 743 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 MED21Q13503 144 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 EFR3AQ14156 821 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 TRAM2Q15035 370 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 LSRQ86X29 649 aaPredicted RBP24.6■■□□□ 1.53
MSX1-201ENST00000382723 DTX1Q86Y01 620 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 POGLUT1Q8NBL1 392 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 AQP11Q8NBQ7 271 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 RNF217Q8TC41 542 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 TFAP2CQ92754 450 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 NACC2Q96BF6 587 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 CNBD2Q96M20 576 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 RASL10BQ96S79 203 aa24.6■■□□□ 1.53
MSX1-201ENST00000382723 SH3PXD2BA1X283 911 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 SCO2O43819 266 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 FMO6PO60774 539 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 RPSAP08865 295 aaKnown RBP24.59■■□□□ 1.53
MSX1-201ENST00000382723 EVI2BP34910 448 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 ADH7P40394 386 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 RAD23AP54725 363 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 Q0VFX4 171 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 ATP1A4Q13733 1029 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 CMPK2Q5EBM0 449 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 RAB43Q86YS6 212 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 TMCO5AQ8N6Q1 288 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 GRHL3Q8TE85 626 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 GTPBP3Q969Y2 492 aaKnown RBP24.59■■□□□ 1.53
MSX1-201ENST00000382723 MBOAT4Q96T53 435 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 NIPSNAP1Q9BPW8 284 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 PTPRZ1P23471 2315 aaPredicted RBP24.59■■□□□ 1.53
MSX1-201ENST00000382723 PTPRBP23467 1997 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 TRAPPC13A5PLN9 417 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 DENRO43583 198 aaKnown RBP24.59■■□□□ 1.53
MSX1-201ENST00000382723 MAN1A2O60476 641 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 ITGA10O75578 1167 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 GASTP01350 101 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 ICAM2P13598 275 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 ANXA8P13928 327 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 CCR4P51679 360 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 LSM11P83369 360 aaKnown RBP eCLIP24.59■■□□□ 1.53
MSX1-201ENST00000382723 NKAIN4Q8IVV8 208 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 SH3YL1Q96HL8 342 aaPredicted RBP24.59■■□□□ 1.53
MSX1-201ENST00000382723 NODALQ96S42 347 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 FAM117AQ9C073 453 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 TMEM27Q9HBJ8 222 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 CEP250Q9BV73 2442 aa24.59■■□□□ 1.53
MSX1-201ENST00000382723 C17orf51A8MQB3 221 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 ALG1L2C9J202 215 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 ZNF264O43296 627 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 NDUFB5O43674 189 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 FADS1O60427 444 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 NGFRP08138 427 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 ZNF770Q6IQ21 691 aaPredicted RBP24.58■■□□□ 1.53
MSX1-201ENST00000382723 CBLN3Q6UW01 205 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 LYPD8Q6UX82 237 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 CADM2Q8N3J6 435 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 SLC38A4Q969I6 547 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 SLC35B4Q969S0 331 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 KIAA1143Q96AT1 154 aaPredicted RBP24.58■■□□□ 1.53
MSX1-201ENST00000382723 RDH12Q96NR8 316 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 RIBC2Q9H4K1 309 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 CDCP1Q9H5V8 836 aa24.58■■□□□ 1.53
MSX1-201ENST00000382723 GMFGO60234 142 aa24.57■■□□□ 1.52
MSX1-201ENST00000382723 NAGAP17050 411 aa24.57■■□□□ 1.52
MSX1-201ENST00000382723 PTNP21246 168 aa24.57■■□□□ 1.52
MSX1-201ENST00000382723 POLR2IP36954 125 aaKnown RBP24.57■■□□□ 1.52
MSX1-201ENST00000382723 TMED10P49755 219 aaKnown RBP24.57■■□□□ 1.52
MSX1-201ENST00000382723 SKP2Q13309 424 aa24.57■■□□□ 1.52
MSX1-201ENST00000382723 SLC36A3Q495N2 470 aa24.57■■□□□ 1.52
MSX1-201ENST00000382723 IGF2-ASQ6U949 168 aa24.57■■□□□ 1.52
MSX1-201ENST00000382723 FAM71CQ8NEG0 241 aa24.57■■□□□ 1.52
MSX1-201ENST00000382723 OR4K5Q8NGD3 323 aa24.57■■□□□ 1.52
MSX1-201ENST00000382723 TMCO6Q96DC7 493 aa24.57■■□□□ 1.52
MSX1-201ENST00000382723 POLR2J2Q9GZM3 115 aaKnown RBP24.57■■□□□ 1.52
MSX1-201ENST00000382723 POLR2J3Q9H1A7 115 aaKnown RBP24.57■■□□□ 1.52
MSX1-201ENST00000382723 ZNF556Q9HAH1 456 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms