RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CPEB1Q9BZB8 566 aaKnown RBP7.61□□□□□ -1.19
ATG4A-201ENST00000343524 TMEM39BQ9GZU3 492 aa7.61□□□□□ -1.19
ATG4A-201ENST00000343524 TMPRSS5Q9H3S3 457 aa7.61□□□□□ -1.19
ATG4A-201ENST00000343524 KLHL31Q9H511 634 aa7.61□□□□□ -1.19
ATG4A-201ENST00000343524 XKR8Q9H6D3 395 aa7.61□□□□□ -1.19
ATG4A-201ENST00000343524 ELAC1Q9H777 363 aaKnown RBP7.61□□□□□ -1.19
ATG4A-201ENST00000343524 TRIM36Q9NQ86 728 aa7.61□□□□□ -1.19
ATG4A-201ENST00000343524 STARD7Q9NQZ5 370 aa7.61□□□□□ -1.19
ATG4A-201ENST00000343524 MED17Q9NVC6 651 aa7.61□□□□□ -1.19
ATG4A-201ENST00000343524 NKIRAS2Q9NYR9 191 aa7.61□□□□□ -1.19
ATG4A-201ENST00000343524 NTMQ9P121 344 aa7.61□□□□□ -1.19
ATG4A-201ENST00000343524 HS3ST4Q9Y661 456 aa7.61□□□□□ -1.19
ATG4A-201ENST00000343524 RLFQ13129 1914 aa7.61□□□□□ -1.19
ATG4A-201ENST00000343524 CDH23Q9H251 3354 aa7.61□□□□□ -1.19
ATG4A-201ENST00000343524 KCNE1BA0A087WTH5 132 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 TRBV4-1A0A0J9YWV2 114 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 HHLA1C9JL84 531 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 TREHO43280 583 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 HYAL3O43820 417 aaPredicted RBP7.6□□□□□ -1.19
ATG4A-201ENST00000343524 GREM1O60565 184 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 RAMP2O60895 175 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 RECQL4O94761 1208 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 OR2F2O95006 317 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 RECKO95980 971 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 IGHA1P01876 353 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 GKN3PP0CG01 181 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 PRSS56P0CW18 603 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 DRD5P21918 477 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 FPR3P25089 353 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 PCSK1P29120 753 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 IFNGR2P38484 337 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 GIPRP48546 466 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 RAB5CP51148 216 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 ARFIP1P53367 373 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 CDH11P55287 796 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 TAS2R60P59551 318 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 ACTR1AP61163 376 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 DGCR2P98153 550 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 CDK5Q00535 292 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 ACSM2AQ08AH3 577 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 GAB1Q13480 694 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 SERINC3Q13530 473 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 OR2F1Q13607 317 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 IL10RAQ13651 578 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 TNFAIP1Q13829 316 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 DDX39BQ13838 428 aaKnown RBP7.6□□□□□ -1.19
ATG4A-201ENST00000343524 GINS1Q14691 196 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 OR2B11Q5JQS5 317 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 UBE2NLQ5JXB2 153 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 EOGTQ5NDL2 527 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 HENMT1Q5T8I9 393 aaKnown RBP7.6□□□□□ -1.19
ATG4A-201ENST00000343524 ACSM2BQ68CK6 577 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 H3F3CQ6NXT2 135 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 ZNF613Q6PF04 617 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 SMARCD3Q6STE5 483 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 OTOP2Q7RTS6 562 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 WDR53Q7Z5U6 358 aaPredicted RBP7.6□□□□□ -1.19
ATG4A-201ENST00000343524 KRT77Q7Z794 578 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 TEX19Q8NA77 164 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 OR1J4Q8NGS1 313 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 PHOSPHO2Q8TCD6 241 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 ARL11Q969Q4 196 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 PSMG2Q969U7 264 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 MTFMTQ96DP5 389 aaKnown RBP7.6□□□□□ -1.19
ATG4A-201ENST00000343524 TMEM68Q96MH6 324 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 MTERF1Q99551 399 aaKnown RBP7.6□□□□□ -1.19
ATG4A-201ENST00000343524 NOX3Q9HBY0 568 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 PRDM5Q9NQX1 630 aaPredicted RBP7.6□□□□□ -1.19
ATG4A-201ENST00000343524 SMCO4Q9NRQ5 59 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 CA10Q9NS85 328 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 KLHL9Q9P2J3 617 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 C17orf113A0A1B0GUU1 675 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 SHISA3A0PJX4 238 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 PRAMEF25A6NGN4 478 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 SLC9B1P1A6NJY1 282 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 RFPL4AA6NLU0 287 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 ZNF879B4DU55 563 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 RFPL4AL1F8VTS6 287 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 GABARAPH6UMI1 98 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 RFXAPO00287 272 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 POP7O75817 140 aaKnown RBP7.6□□□□□ -1.19
ATG4A-201ENST00000343524 OAZ2O95190 189 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 IL3P08700 152 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 LAMP1P11279 417 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 ETFAP13804 333 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 ABOP16442 354 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 CERS1P27544 350 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 CCR7P32248 378 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 PMELP40967 661 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 CCR8P51685 355 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 RIDAP52758 137 aaKnown RBP7.6□□□□□ -1.19
ATG4A-201ENST00000343524 BACE1P56817 501 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 LILRA4P59901 499 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 CD81P60033 236 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 RAB8AP61006 207 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 EFNB1P98172 346 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 E2F1Q01094 437 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 TFF2Q03403 129 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 RING1Q06587 406 aa7.6□□□□□ -1.19
ATG4A-201ENST00000343524 SOX4Q06945 474 aaPredicted RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms