RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 ZNF133P52736 654 aaPredicted RBP3.11□□□□□ -1.91
CSMD3-202ENST00000339701 DCDC1P59894 354 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 SNTB2Q13425 540 aaKnown RBP3.11□□□□□ -1.91
CSMD3-202ENST00000339701 CCNIQ14094 377 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 TAF1AQ15573 450 aaPredicted RBP3.11□□□□□ -1.91
CSMD3-202ENST00000339701 PAGE3Q5JUK9 113 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 OGFRL1Q5TC84 451 aaPredicted RBP3.11□□□□□ -1.91
CSMD3-202ENST00000339701 FRMPD2BQ6IN97 320 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 LRP11Q86VZ4 500 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 SIAH1Q8IUQ4 282 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 C1orf87Q8N0U7 546 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 FAM216AQ8WUB2 273 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 SSX3Q99909 188 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 OCSTAMPQ9BR26 566 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 POLDIP3Q9BY77 421 aaKnown RBP3.11□□□□□ -1.91
CSMD3-202ENST00000339701 NKX6-2Q9C056 277 aaPredicted RBP3.11□□□□□ -1.91
CSMD3-202ENST00000339701 GRIP2Q9C0E4 1043 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 ZNF286AQ9HBT8 521 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 POMPQ9Y244 141 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 YIPF1Q9Y548 306 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 WNT6Q9Y6F9 365 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 GFRA2O00451 464 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 SLC37A4O43826 429 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 ECI2O75521 394 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 AHSGP02765 367 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 CHRM2P08172 466 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 CRABP1P29762 137 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 OR2B6P58173 313 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 SPIBQ01892 262 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 NRG1Q02297 640 aaPredicted RBP3.11□□□□□ -1.91
CSMD3-202ENST00000339701 PWP1Q13610 501 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 SPCS2Q15005 226 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 SF3A2Q15428 464 aaKnown RBP3.11□□□□□ -1.91
CSMD3-202ENST00000339701 CARD17Q5XLA6 110 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 Q6ZSR6 202 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 FAM122BQ7Z309 247 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 TECPR1Q7Z6L1 1165 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 CBARPQ8N350 705 aaPredicted RBP3.11□□□□□ -1.91
CSMD3-202ENST00000339701 ZFP41Q8N8Y5 198 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 OR13C3Q8NGS6 347 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 CLEC4DQ8WXI8 215 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 DCUN1D4Q92564 292 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 SH3YL1Q96HL8 342 aaPredicted RBP3.11□□□□□ -1.91
CSMD3-202ENST00000339701 CIB3Q96Q77 187 aaPredicted RBP3.11□□□□□ -1.91
CSMD3-202ENST00000339701 LPAR4Q99677 370 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 NICN1Q9BSH3 213 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 DPH3P1Q9H4G8 78 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 MARCOQ9UEW3 520 aaPredicted RBP3.11□□□□□ -1.91
CSMD3-202ENST00000339701 TSPAN16Q9UKR8 245 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 CAMK2AQ9UQM7 478 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 K7EPI3 171 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 RAB5AP20339 215 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 CALCRP30988 508 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 VASPP50552 380 aaPredicted RBP3.1□□□□□ -1.91
CSMD3-202ENST00000339701 LGALS4P56470 323 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 RPL23AP62750 156 aaKnown RBP3.1□□□□□ -1.91
CSMD3-202ENST00000339701 FLI1Q01543 452 aaPredicted RBP3.1□□□□□ -1.91
CSMD3-202ENST00000339701 CATR1Q13166 79 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 ADGRE1Q14246 886 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 CST6Q15828 149 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 MPEG1Q2M385 716 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 LINC01559Q495D7 138 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 PDZD11Q5EBL8 140 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 PODNL1Q6PEZ8 512 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 GK5Q6ZS86 529 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 PCDH20Q8N6Y1 951 aaKnown RBP3.1□□□□□ -1.91
CSMD3-202ENST00000339701 C12orf76Q8N812 135 aaPredicted RBP3.1□□□□□ -1.91
CSMD3-202ENST00000339701 EXD3Q8N9H8 876 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 ZMIZ2Q8NF64 920 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 TSEN15Q8WW01 171 aaKnown RBP3.1□□□□□ -1.91
CSMD3-202ENST00000339701 ZFPM2Q8WW38 1151 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 LIN37Q96GY3 246 aaPredicted RBP3.1□□□□□ -1.91
CSMD3-202ENST00000339701 ZNF416Q9BWM5 594 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 DNTTIP1Q9H147 329 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 BLOC1S4Q9NUP1 217 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 HCFC2Q9Y5Z7 792 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 MYOFQ9NZM1 2061 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 UMAD1C9J7I0 102 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 FOXN3O00409 490 aaPredicted RBP3.1□□□□□ -1.91
CSMD3-202ENST00000339701 SYT7O43581 403 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 IL2RAP01589 272 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 CEACAM1P13688 526 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 UGT1A6P19224 532 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 CST5P28325 142 aaPredicted RBP3.1□□□□□ -1.91
CSMD3-202ENST00000339701 HHEXQ03014 270 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 BST1Q10588 318 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 BAMBIQ13145 260 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 SLC14A1Q13336 389 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 TIGITQ495A1 244 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 EARS2Q5JPH6 523 aaKnown RBP3.1□□□□□ -1.91
CSMD3-202ENST00000339701 C22orf42Q6IC83 251 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 SGPP2Q8IWX5 399 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 ZNF676Q8N7Q3 588 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 COX18Q8N8Q8 333 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 SPTSSAQ969W0 71 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 PINX1Q96BK5 328 aaKnown RBP3.1□□□□□ -1.91
CSMD3-202ENST00000339701 PHYHIPLQ96FC7 376 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 PWWP2AQ96N64 755 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 SLC46A1Q96NT5 459 aa3.1□□□□□ -1.91
CSMD3-202ENST00000339701 MTERF1Q99551 399 aaKnown RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms