RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 FLRT3Q9NZU0 649 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 FOXJ2Q9P0K8 574 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 WDFY3Q8IZQ1 3526 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 A0A087WUU8 490 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 SPAARA0A1B0GVQ0 90 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 OR6C70A6NIJ9 312 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 TMEM200CA6NKL6 621 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 BCKDKO14874 412 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 COX6A1P12074 109 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 CYP4B1P13584 511 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 HPGDP15428 266 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 NAGAP17050 411 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 RNF144AP50876 292 aaPredicted RBP12.97□□□□□ -0.33
SS18-201ENST00000269137 IL1RL1Q01638 556 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 FOXD4Q12950 439 aaPredicted RBP12.97□□□□□ -0.33
SS18-201ENST00000269137 EXT1Q16394 746 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 CD300LDQ6UXZ3 194 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 THAP5Q7Z6K1 395 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 TMPRSS12Q86WS5 348 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 PRR22Q8IZ63 422 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 C8orf59Q8N0T1 100 aaPredicted RBP12.97□□□□□ -0.33
SS18-201ENST00000269137 LSMEM1Q8N8F7 131 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 ELP5Q8TE02 316 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 ACOT11Q8WXI4 607 aaPredicted RBP12.97□□□□□ -0.33
SS18-201ENST00000269137 PITX2Q99697 317 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 TMEM27Q9HBJ8 222 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 TCFL5Q9UL49 500 aa12.97□□□□□ -0.33
SS18-201ENST00000269137 NDRG4Q9ULP0 352 aaKnown RBP12.97□□□□□ -0.33
SS18-201ENST00000269137 FARSAQ9Y285 508 aaKnown RBP12.97□□□□□ -0.33
SS18-201ENST00000269137 A0A1W2PQD3 144 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 LYPD3O95274 346 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 TNFAIP8O95379 198 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 TCN2P20062 427 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 ENDOUP21128 410 aaKnown RBP12.96□□□□□ -0.33
SS18-201ENST00000269137 RYKP34925 604 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 IFNGR2P38484 337 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 CLK3P49761 638 aaKnown RBP12.96□□□□□ -0.33
SS18-201ENST00000269137 UGT2B15P54855 530 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 COX10Q12887 443 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 TARDBPQ13148 414 aaKnown RBP eCLIP12.96□□□□□ -0.332e-8■■□□□ 13.7
SS18-201ENST00000269137 EFR3AQ14156 821 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 ZNF691Q5VV52 312 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 C1orf94Q6P1W5 598 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 KIRREL2Q6UWL6 708 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 APOOLQ6UXV4 268 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 ZER1Q7Z7L7 766 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 AMER2Q8N7J2 671 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 GTPBP3Q969Y2 492 aaKnown RBP12.96□□□□□ -0.33
SS18-201ENST00000269137 NACC2Q96BF6 587 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 HRASLS5Q96KN8 279 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 UCK2Q9BZX2 261 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 ZNF696Q9H7X3 374 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 EXOSC3Q9NQT5 275 aaKnown RBP12.96□□□□□ -0.33
SS18-201ENST00000269137 NPFFR2Q9Y5X5 522 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 HSPE1-MOB4S4R3N1 261 aa12.96□□□□□ -0.33
SS18-201ENST00000269137 HEATR5AQ86XA9 2040 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 ALG1L2C9J202 215 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 H3BNH8 94 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 TM4SF5O14894 197 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 ADAM11O75078 769 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 ICOSLGO75144 302 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 PPM1BO75688 479 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 TNFSF15O95150 251 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 EPHA2P29317 976 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 ESRRGP62508 458 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 RPP38P78345 283 aaKnown RBP12.95□□□□□ -0.34
SS18-201ENST00000269137 PLAG1Q6DJT9 500 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 KLHL17Q6TDP4 642 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 ZNF730Q6ZMV8 503 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 NDUFAF7Q7L592 441 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 NKAIN4Q8IVV8 208 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 OR11G2Q8NGC1 345 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 M1APQ8TC57 530 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 PRSS27Q9BQR3 290 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 GPR87Q9BY21 358 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 MYOTQ9UBF9 498 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 SLC7A7Q9UM01 511 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 A0A0B4J2E0 115 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 A0A1B0GX12 115 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 C21orf140B9A014 251 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 SOCS6O14544 535 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 NADKO95544 446 aaPredicted RBP12.95□□□□□ -0.34
SS18-201ENST00000269137 UBL4AP11441 157 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 POU2F1P14859 743 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 ISL1P61371 349 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 RPS15P62841 145 aaKnown RBP12.95□□□□□ -0.34
SS18-201ENST00000269137 SSPNQ14714 243 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 CD226Q15762 336 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 MBOAT2Q6ZWT7 520 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 RNF113BQ8IZP6 322 aaKnown RBP12.95□□□□□ -0.34
SS18-201ENST00000269137 NLGN4XQ8N0W4 816 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 SETD9Q8NE22 299 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 NLGN4YQ8NFZ3 816 aaPredicted RBP12.95□□□□□ -0.34
SS18-201ENST00000269137 FBLIM1Q8WUP2 373 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 YTHDF1Q9BYJ9 559 aaKnown RBP12.95□□□□□ -0.34
SS18-201ENST00000269137 DEFB126Q9BYW3 111 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 LIN28AQ9H9Z2 209 aaKnown RBP12.95□□□□□ -0.34
SS18-201ENST00000269137 MMP25Q9NPA2 562 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 REV1Q9UBZ9 1251 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 MYRFQ9Y2G1 1151 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms