RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 G0S2P27469 103 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 SLC6A11P48066 632 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 LHX1P48742 406 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 OCLNQ16625 522 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 LINC00303Q3SY05 128 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 SERINC5Q86VE9 423 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 SPATA2LQ8IUW3 424 aaPredicted RBP13.72□□□□□ -0.21
PTPRA-201ENST00000216877 RNASE11Q8TAA1 199 aaKnown RBP13.72□□□□□ -0.21
PTPRA-201ENST00000216877 SEC22AQ96IW7 307 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 PLA2G12AQ9BZM1 189 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 TM6SF2Q9BZW4 377 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 SLC38A1Q9H2H9 487 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 MED9Q9NWA0 146 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 ZSCAN32Q9NX65 697 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 COMMD9Q9P000 198 aa13.72□□□□□ -0.21
PTPRA-201ENST00000216877 MYO7AQ13402 2215 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 POLR2AP24928 1970 aaKnown RBP13.71□□□□□ -0.21
PTPRA-201ENST00000216877 ANHXE9PGG2 379 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 GPR37O15354 613 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 SCN2BO60939 215 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 NME1P15531 152 aaKnown RBP13.71□□□□□ -0.21
PTPRA-201ENST00000216877 MMP11P24347 488 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 ATP5C1P36542 298 aaKnown RBP13.71□□□□□ -0.21
PTPRA-201ENST00000216877 GPX4P36969 197 aaPredicted RBP13.71□□□□□ -0.21
PTPRA-201ENST00000216877 IKZF1Q13422 519 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 GLT8D1Q68CQ7 371 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 MON1AQ86VX9 555 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 KLHDC8BQ8IXV7 354 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 FAM26EQ8N5C1 309 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 BBS1Q8NFJ9 593 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 OR10H5Q8NGA6 315 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 OR10R2Q8NGX6 335 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 OR8S1Q8NH09 359 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 MRPS30Q9NP92 439 aaKnown RBP13.71□□□□□ -0.21
PTPRA-201ENST00000216877 RPS10P5Q9NQ39 176 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 FAM96BQ9Y3D0 163 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 PIKFYVEQ9Y2I7 2098 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 MTMR11A4FU01 709 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 MEIS3P2A8K0S8 358 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 RNF13O43567 381 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 PRAF2O60831 178 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 THP07101 528 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 IFNGR1P15260 489 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 ADH7P40394 386 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 RFX3P48380 749 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 DMRTC2Q8IXT2 367 aaPredicted RBP13.71□□□□□ -0.21
PTPRA-201ENST00000216877 MS4A4AQ96JQ5 239 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 HHIPQ96QV1 700 aa13.71□□□□□ -0.21
PTPRA-201ENST00000216877 UNKLQ9H9P5 680 aaKnown RBP13.71□□□□□ -0.21
PTPRA-201ENST00000216877 FAAHO00519 579 aa13.71□□□□□ -0.22
PTPRA-201ENST00000216877 LATS1O95835 1130 aa13.71□□□□□ -0.22
PTPRA-201ENST00000216877 CSNK1DP48730 415 aa13.71□□□□□ -0.22
PTPRA-201ENST00000216877 CHAF1BQ13112 559 aa13.71□□□□□ -0.22
PTPRA-201ENST00000216877 MS4A13Q5J8X5 152 aa13.71□□□□□ -0.22
PTPRA-201ENST00000216877 FIGNL1Q6PIW4 674 aa13.71□□□□□ -0.22
PTPRA-201ENST00000216877 UMODL1-AS1Q8N2C9 162 aa13.71□□□□□ -0.22
PTPRA-201ENST00000216877 GTPBP8Q8N3Z3 284 aaPredicted RBP13.71□□□□□ -0.22
PTPRA-201ENST00000216877 DUSP19Q8WTR2 217 aa13.71□□□□□ -0.22
PTPRA-201ENST00000216877 CNTNAP3BQ96NU0 1288 aa13.71□□□□□ -0.22
PTPRA-201ENST00000216877 PRO1933Q9H354 126 aa13.71□□□□□ -0.22
PTPRA-201ENST00000216877 MED20Q9H944 212 aa13.71□□□□□ -0.22
PTPRA-201ENST00000216877 SDK1Q7Z5N4 2213 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 LIPCP11150 499 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 NDUFB7P17568 137 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 MST1P26927 711 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 DCTDP32321 178 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 IRS1P35568 1242 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 C12orf73Q69YU5 71 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 ZNF783Q6ZMS7 281 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 BEST3Q8N1M1 668 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 OR4Q3Q8NH05 313 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 HRH4Q9H3N8 390 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 FN3KQ9H479 309 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 AKAP7Q9P0M2 348 aaPredicted RBP13.7□□□□□ -0.22
PTPRA-201ENST00000216877 CEP290O15078 2479 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 C17orf102A2RUQ5 167 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 ANKRD66B4E2M5 251 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 WASH3PC4AMC7 463 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 SOCS6O14544 535 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 INSIG1O15503 277 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 SLC25A12O75746 678 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 PYCR1P32322 319 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 C2orf68Q2NKX9 166 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 RNF212Q495C1 297 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 SYTL3Q4VX76 610 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 DCAF12L2Q5VW00 463 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 TCTN3Q6NUS6 607 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 SUCNR1Q9BXA5 334 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 SLC25A32Q9H2D1 315 aa13.7□□□□□ -0.22
PTPRA-201ENST00000216877 CXXC1Q9P0U4 656 aaPredicted RBP13.7□□□□□ -0.22
PTPRA-201ENST00000216877 A0A0G2JLL6 359 aaPredicted RBP13.69□□□□□ -0.22
PTPRA-201ENST00000216877 IRGMA1A4Y4 181 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 FAM170BA6NMN3 283 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 SC5DO75845 299 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 TGFB1P01137 390 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 UBXN2BQ14CS0 331 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 ZDHHC20Q5W0Z9 365 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 B3GNTL1Q67FW5 361 aaPredicted RBP13.69□□□□□ -0.22
PTPRA-201ENST00000216877 REEP3Q6NUK4 255 aa13.69□□□□□ -0.22
PTPRA-201ENST00000216877 NDUFAF7Q7L592 441 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms