RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SERINC4A6NH21 518 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 H0YJX3 145 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 POU2F1P14859 743 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 IL12BP29460 328 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 TAS2R41P59536 307 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 RPS15P62841 145 aaKnown RBP18.48■□□□□ 0.55
CLN3-250ENST00000636839 EIPR1Q53HC9 387 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 FCRLBQ6BAA4 426 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 MEX3DQ86XN8 651 aaKnown RBP18.48■□□□□ 0.55
CLN3-250ENST00000636839 SLC34A3Q8N130 599 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 PIK3C3Q8NEB9 887 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 OR10G2Q8NGC3 310 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 HSPBAP1Q96EW2 488 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 NRBF2Q96F24 287 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 MBOAT4Q96T53 435 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 FUZQ9BT04 418 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 GABARAPL1Q9H0R8 117 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 TOR3AQ9H497 397 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 UBQLN4Q9NRR5 601 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 USE1Q9NZ43 259 aa18.48■□□□□ 0.55
CLN3-250ENST00000636839 PTPRBP23467 1997 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 OR2J2O76002 312 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 NADKO95544 446 aaPredicted RBP18.47■□□□□ 0.55
CLN3-250ENST00000636839 RYKP34925 604 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 FBXW4P57775 412 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 PODNL1Q6PEZ8 512 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 ATG16L2Q8NAA4 619 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 C17orf47Q8NEP4 570 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 NUBPLQ8TB37 319 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 CYGBQ8WWM9 190 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 ADAMTS14Q8WXS8 1223 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 TFAP2CQ92754 450 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 NIPSNAP1Q9BPW8 284 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 UBAP1Q9NZ09 502 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 NPFFR2Q9Y5X5 522 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 EIF4E1BA6NMX2 242 aaKnown RBP18.47■□□□□ 0.55
CLN3-250ENST00000636839 STMND1H3BQB6 276 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 SLC30A4O14863 429 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 ZFAND5O76080 213 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 THRBP10828 461 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 ACAA2P42765 397 aaKnown RBP18.47■□□□□ 0.55
CLN3-250ENST00000636839 MERTKQ12866 999 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 KDM4DQ6B0I6 523 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 FAHD1Q6P587 224 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 TAGAPQ8N103 731 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 TP53INP1Q96A56 240 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 CNBD2Q96M20 576 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 ADI1Q9BV57 179 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 DEFB126Q9BYW3 111 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.47■□□□□ 0.55
CLN3-250ENST00000636839 WDR70Q9NW82 654 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 MYOTQ9UBF9 498 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 RAB26Q9ULW5 256 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 PCDHGA6Q9Y5G7 932 aa18.47■□□□□ 0.55
CLN3-250ENST00000636839 NSG1A0A0A6YYJ2 146 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 AP3D1O14617 1153 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 GMFGO60234 142 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 CSTAP01040 98 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 GASTP01350 101 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 EPHA2P29317 976 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 Q0VFX4 171 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 SSPNQ14714 243 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 ZNF770Q6IQ21 691 aaPredicted RBP18.46■□□□□ 0.55
CLN3-250ENST00000636839 CBLN3Q6UW01 205 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 PLEKHM3Q6ZWE6 761 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 NDUFAF7Q7L592 441 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 GDF7Q7Z4P5 450 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 MARCH3Q86UD3 253 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 NKAIN4Q8IVV8 208 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 NKD1Q969G9 470 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 ZNF524Q96C55 264 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 OSBPL11Q9BXB4 747 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 LRCH1Q9Y2L9 728 aa18.46■□□□□ 0.55
CLN3-250ENST00000636839 A0A1W2PRQ8 180 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 CDRT15L2A8MXV6 281 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 GFRA3O60609 400 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 CCNB2O95067 398 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 HPRP00739 348 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 HPGDP15428 266 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 TBXA2RP21731 343 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 IGFBP5P24593 272 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 KRT20P35900 424 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 DGCR6Q14129 220 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 FNDC7Q5VTL7 733 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 PLAG1Q6DJT9 500 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 CACTIN-AS1Q8N1I8 211 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 PHOSPHO1Q8TCT1 267 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 GTPBP3Q969Y2 492 aaKnown RBP18.45■□□□□ 0.54
CLN3-250ENST00000636839 ASCL3Q9NQ33 180 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 FBXL4Q9UKA2 621 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 MRTO4Q9UKD2 239 aaKnown RBP18.45■□□□□ 0.54
CLN3-250ENST00000636839 DCDC2BA2VCK2 349 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 SCDO00767 359 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 DENRO43583 198 aaKnown RBP18.45■□□□□ 0.54
CLN3-250ENST00000636839 RBMS1P29558 406 aaKnown RBP18.45■□□□□ 0.54
CLN3-250ENST00000636839 PSMD4P55036 377 aaKnown RBP18.45■□□□□ 0.54
CLN3-250ENST00000636839 OR1Q1Q15612 314 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 DCST1Q5T197 706 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 TMPRSS7Q7RTY8 843 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 AQP11Q8NBQ7 271 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms