RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 RNPS1Q15287 305 aaKnown RBP12.48□□□□□ -0.41
VMP1-209ENST00000588915 CLEC12BQ2HXU8 276 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 PLPPR5Q32ZL2 321 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 TMEM201Q5SNT2 666 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 HBMQ6B0K9 141 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 MFSD12Q6NUT3 480 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 TRMT10CQ7L0Y3 403 aaKnown RBP12.48□□□□□ -0.41
VMP1-209ENST00000588915 SSX8Q7RTT4 187 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 HSD17B8Q92506 261 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 OSTF1Q92882 214 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 CPNE4Q96A23 557 aaPredicted RBP12.48□□□□□ -0.41
VMP1-209ENST00000588915 ZBED6CLQ96FA7 236 aaPredicted RBP12.48□□□□□ -0.41
VMP1-209ENST00000588915 REXO5Q96IC2 774 aaKnown RBP12.48□□□□□ -0.41
VMP1-209ENST00000588915 KLHL15Q96M94 604 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 RNF145Q96MT1 663 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 GRIP2Q9C0E4 1043 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 LRTM1Q9HBL6 345 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 ACSS1Q9NUB1 689 aaPredicted RBP12.48□□□□□ -0.41
VMP1-209ENST00000588915 LAMP3Q9UQV4 416 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 RNF115Q9Y4L5 304 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 CCL27Q9Y4X3 112 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 ANK3Q12955 4377 aaKnown RBP12.48□□□□□ -0.41
VMP1-209ENST00000588915 FBN1P35555 2871 aaKnown RBP12.47□□□□□ -0.41
VMP1-209ENST00000588915 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 TNFSF11O14788 317 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 TLX2O43763 284 aaPredicted RBP12.47□□□□□ -0.41
VMP1-209ENST00000588915 SEC22BO75396 215 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 GCM2O75603 506 aaPredicted RBP12.47□□□□□ -0.41
VMP1-209ENST00000588915 KCNK2O95069 426 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 FESP07332 822 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 DANCRP0C864 163 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 UROSP10746 265 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 HPGDP15428 266 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 ELK4P28324 431 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 GPC1P35052 558 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 MANFP55145 182 aaKnown RBP12.47□□□□□ -0.41
VMP1-209ENST00000588915 DMTNQ08495 405 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 P2RY6Q15077 328 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 NCMAPQ5T1S8 102 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 ZNF551Q7Z340 670 aaPredicted RBP12.47□□□□□ -0.41
VMP1-209ENST00000588915 MTERF4Q7Z6M4 381 aaKnown RBP12.47□□□□□ -0.41
VMP1-209ENST00000588915 LILRA2Q8N149 483 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 GABRG1Q8N1C3 465 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 CCNYL1Q8N7R7 359 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 MNS1Q8NEH6 495 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 NUP43Q8NFH3 380 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 LILRB1Q8NHL6 650 aaPredicted RBP12.47□□□□□ -0.41
VMP1-209ENST00000588915 SLC9A6Q92581 669 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 FBXW5Q969U6 566 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 GTPBP3Q969Y2 492 aaKnown RBP12.47□□□□□ -0.41
VMP1-209ENST00000588915 GIMAP5Q96F15 307 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 EGLN2Q96KS0 407 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 REG4Q9BYZ8 158 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 L2HGDHQ9H9P8 463 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 EQTNQ9NQ60 294 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 FBXO34Q9NWN3 711 aa12.47□□□□□ -0.41
VMP1-209ENST00000588915 CHD3Q12873 2000 aaKnown RBP12.47□□□□□ -0.41
VMP1-209ENST00000588915 GJE1A6NN92 205 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 G3V2L1 256 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 SLC28A1O00337 649 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 SCDO00767 359 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 GMFGO60234 142 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 CRCPO75575 148 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 URI1O94763 535 aaPredicted RBP12.46□□□□□ -0.41
VMP1-209ENST00000588915 CD3EP07766 207 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 THBS1P07996 1170 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 LINGO3P0C6S8 592 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 MYL2P10916 166 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 PYGBP11216 843 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 DDX5P17844 614 aaKnown RBP12.46□□□□□ -0.41
VMP1-209ENST00000588915 DNAJB13P59910 316 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 ZNF844Q08AG5 666 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 HSPB3Q12988 150 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 VEZF1Q14119 521 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 ZNF239Q16600 458 aaKnown RBP12.46□□□□□ -0.41
VMP1-209ENST00000588915 EXOSC6Q5RKV6 272 aaKnown RBP12.46□□□□□ -0.41
VMP1-209ENST00000588915 SFRP5Q5T4F7 317 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 ZYG11AQ6WRX3 759 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 RNF165Q6ZSG1 346 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 FRMD7Q6ZUT3 714 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 SLC43A2Q8N370 569 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 SLC16A11Q8NCK7 471 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 B4GALNT2Q8NHY0 566 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 POC1BQ8TC44 478 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 RNF128Q8TEB7 428 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 SMAP2Q8WU79 429 aaPredicted RBP12.46□□□□□ -0.41
VMP1-209ENST00000588915 S100PBPQ96BU1 408 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 FCRL1Q96LA6 429 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 MS4A4EQ96PG1 132 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 CCT7Q99832 543 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 HOXD1Q9GZZ0 328 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 REEP4Q9H6H4 257 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 C12orf49Q9H741 205 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 C1orf109Q9NX04 203 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 GIN1Q9NXP7 522 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 ACTL7BQ9Y614 415 aa12.46□□□□□ -0.41
VMP1-209ENST00000588915 PRR14LQ5THK1 2151 aa12.46□□□□□ -0.42
VMP1-209ENST00000588915 RNF223E7ERA6 249 aa12.45□□□□□ -0.42
VMP1-209ENST00000588915 KIF2AO00139 706 aaPredicted RBP12.45□□□□□ -0.42
VMP1-209ENST00000588915 RIPK2O43353 540 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms