RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 EP300Q09472 2414 aaPredicted RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 ST3GAL3Q11203 375 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 RAPSNQ13702 412 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 KEAP1Q14145 624 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 OR1Q1Q15612 314 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 CTU2Q2VPK5 515 aaKnown RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 DCAF12Q5T6F0 453 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 FAM69BQ5VUD6 431 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 KLHL17Q6TDP4 642 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 DHRS13Q6UX07 377 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 RAB11FIP2Q7L804 512 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 PIP4P1Q86T03 277 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 SLCO6A1Q86UG4 719 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 GRAMD2AQ8IUY3 354 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 NKAIN4Q8IVV8 208 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 SLC34A3Q8N130 599 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 LINC00471Q8N535 108 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 ZNF441Q8N8Z8 693 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 B3GNT7Q8NFL0 401 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 OR4K5Q8NGD3 323 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 ADAMTS16Q8TE57 1224 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 SLC38A4Q969I6 547 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 C8orf44Q96CB5 159 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 ARSGQ96EG1 525 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 LIN37Q96GY3 246 aaPredicted RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 SLC41A3Q96GZ6 507 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 PITX2Q99697 317 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 LRFN3Q9BTN0 628 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 TMUB1Q9BVT8 246 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 COL25A1Q9BXS0 654 aaPredicted RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 DGCR6LQ9BY27 220 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 POLR2J2Q9GZM3 115 aaKnown RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 ING2Q9H160 280 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 POLR2J3Q9H1A7 115 aaKnown RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 EVA1AQ9H8M9 152 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 WDR54Q9H977 334 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 LIN28AQ9H9Z2 209 aaKnown RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 TOR4AQ9NXH8 423 aa9.69□□□□□ -0.86
SS18-217ENST00000580958 DNAJB12Q9NXW2 375 aaKnown RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 C19orf25Q9UFG5 118 aaPredicted RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 TESQ9UGI8 421 aaKnown RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 ZNF223Q9UK11 482 aaPredicted RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 NXT1Q9UKK6 140 aaKnown RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 PTRH2Q9Y3E5 179 aaKnown RBP9.69□□□□□ -0.86
SS18-217ENST00000580958 PTPRBP23467 1997 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 A0A087WUU8 490 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 CCDC187A0A096LP49 1063 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 TRAPPC13A5PLN9 417 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 SERINC4A6NH21 518 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 TO15178 435 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 TSPAN2O60636 221 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 FMO6PO60774 539 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 REM1O75628 298 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 SMNDC1O75940 238 aaKnown RBP eCLIP9.68□□□□□ -0.86
SS18-217ENST00000580958 STK17BO94768 372 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 LYPD3O95274 346 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 UTS2O95399 124 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 CYC1P08574 325 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 TGM1P22735 817 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 ELK4P28324 431 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 IL12BP29460 328 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 GSSP48637 474 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 ISL1P61371 349 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 RNF4P78317 190 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 RPP38P78345 283 aaKnown RBP9.68□□□□□ -0.86
SS18-217ENST00000580958 IL5RAQ01344 420 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 PLCXD2Q0VAA5 305 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 NCF4Q15080 339 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 MEP1AQ16819 746 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 ZSWIM7Q19AV6 140 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 NDUFAF6Q330K2 333 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 DESI1Q6ICB0 168 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 PRICKLE2Q7Z3G6 844 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 LSRQ86X29 649 aaPredicted RBP9.68□□□□□ -0.86
SS18-217ENST00000580958 MEX3DQ86XN8 651 aaKnown RBP9.68□□□□□ -0.86
SS18-217ENST00000580958 NLGN4XQ8N0W4 816 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 PARP8Q8N3A8 854 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 GATSQ8NAP1 163 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 SETD9Q8NE22 299 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 DEFB124Q8NES8 71 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 OR4C3Q8NH37 302 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 OMA1Q96E52 524 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 HSPBAP1Q96EW2 488 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 VMP1Q96GC9 406 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 DEPDC7Q96QD5 511 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 TAAR9Q96RI9 348 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 ADOQ96SZ5 270 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 LPAR4Q99677 370 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 APOL4Q9BPW4 351 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 ZNF559Q9BR84 538 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 MRPS26Q9BYN8 205 aaKnown RBP9.68□□□□□ -0.86
SS18-217ENST00000580958 UCK2Q9BZX2 261 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 SEMA4CQ9C0C4 833 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 HOXD1Q9GZZ0 328 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 ANKRD19PQ9H560 264 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 BATF3Q9NR55 127 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 MRTO4Q9UKD2 239 aaKnown RBP9.68□□□□□ -0.86
SS18-217ENST00000580958 NDRG4Q9ULP0 352 aaKnown RBP9.68□□□□□ -0.86
SS18-217ENST00000580958 SLC7A7Q9UM01 511 aa9.68□□□□□ -0.86
SS18-217ENST00000580958 PCDHGA1Q9Y5H4 931 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms