RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 KERAO60938 352 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 PORP16435 677 aaPredicted RBP14.02□□□□□ -0.17
VPS53-218ENST00000575207 SELEP16581 610 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 SERPINB1P30740 379 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 PCGF2P35227 344 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 GPR6P46095 362 aaPredicted RBP14.02□□□□□ -0.17
VPS53-218ENST00000575207 IL1RL1Q01638 556 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 E2F2Q14209 437 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 ACSM5Q6NUN0 579 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 C16orf87Q6PH81 154 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 LAS2Q8IYD9 372 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 SLC43A2Q8N370 569 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 OR4F5Q8NH21 305 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 UBE2E3Q969T4 207 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 EFHD2Q96C19 240 aaPredicted RBP14.02□□□□□ -0.17
VPS53-218ENST00000575207 ZNF48Q96MX3 618 aaPredicted RBP14.02□□□□□ -0.17
VPS53-218ENST00000575207 NPAS1Q99742 590 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 PSD2Q9BQI7 771 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 FRMD8P1Q9BZ68 369 aaPredicted RBP14.02□□□□□ -0.17
VPS53-218ENST00000575207 CXorf36Q9H7Y0 433 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 DDX31Q9H8H2 851 aaKnown RBP14.02□□□□□ -0.17
VPS53-218ENST00000575207 TIGARQ9NQ88 270 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 ABHD10Q9NUJ1 306 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 TAS2R16Q9NYV7 291 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 VDAC3Q9Y277 283 aa14.02□□□□□ -0.17
VPS53-218ENST00000575207 TCRBV7S3A2A0A539 114 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 C7orf72A4D263 438 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 FRS3O43559 492 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 ATP1B1P05026 303 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 RAB10P61026 200 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 IRF8Q02556 426 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 TBCCQ15814 346 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 GABRA6Q16445 453 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 TRMT12Q53H54 448 aaKnown RBP14.01□□□□□ -0.17
VPS53-218ENST00000575207 OR7E24Q6IFN5 339 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 RAD9BQ6WBX8 426 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 SYT10Q6XYQ8 523 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 FRA10AC1Q70Z53 315 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 SPATC1Q76KD6 591 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 WDR31Q8NA23 367 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 C2CD4AQ8NCU7 369 aaPredicted RBP14.01□□□□□ -0.17
VPS53-218ENST00000575207 KLHL15Q96M94 604 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 DOK1Q99704 481 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 TMEM185BQ9H7F4 350 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 ANKZF1Q9H8Y5 726 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 KLHL9Q9P2J3 617 aa14.01□□□□□ -0.17
VPS53-218ENST00000575207 C5orf63A6NC05 138 aa14□□□□□ -0.17
VPS53-218ENST00000575207 RGS14O43566 566 aa14□□□□□ -0.17
VPS53-218ENST00000575207 PLPP2O43688 288 aa14□□□□□ -0.17
VPS53-218ENST00000575207 GMFGO60234 142 aa14□□□□□ -0.17
VPS53-218ENST00000575207 MPZL1O95297 269 aa14□□□□□ -0.17
VPS53-218ENST00000575207 NGFP01138 241 aa14□□□□□ -0.17
VPS53-218ENST00000575207 IGFBP1P08833 259 aaPredicted RBP14□□□□□ -0.17
VPS53-218ENST00000575207 CCDC175P0C221 793 aa14□□□□□ -0.17
VPS53-218ENST00000575207 ME2P23368 584 aa14□□□□□ -0.17
VPS53-218ENST00000575207 GATA3P23771 443 aa14□□□□□ -0.17
VPS53-218ENST00000575207 GABRB3P28472 473 aa14□□□□□ -0.17
VPS53-218ENST00000575207 BSGP35613 385 aa14□□□□□ -0.17
VPS53-218ENST00000575207 MANFP55145 182 aaKnown RBP14□□□□□ -0.17
VPS53-218ENST00000575207 CORO7P57737 925 aa14□□□□□ -0.17
VPS53-218ENST00000575207 CHIT1Q13231 466 aa14□□□□□ -0.17
VPS53-218ENST00000575207 SNX1Q13596 522 aa14□□□□□ -0.17
VPS53-218ENST00000575207 PDK4Q16654 411 aa14□□□□□ -0.17
VPS53-218ENST00000575207 DCAF12L2Q5VW00 463 aa14□□□□□ -0.17
VPS53-218ENST00000575207 MED27Q6P2C8 311 aa14□□□□□ -0.17
VPS53-218ENST00000575207 C4orf22Q6V702 233 aa14□□□□□ -0.17
VPS53-218ENST00000575207 NPSR1Q6W5P4 371 aa14□□□□□ -0.17
VPS53-218ENST00000575207 RNF175Q8N4F7 328 aa14□□□□□ -0.17
VPS53-218ENST00000575207 OR7G3Q8NG95 312 aa14□□□□□ -0.17
VPS53-218ENST00000575207 C7orf69Q9H7B7 122 aa14□□□□□ -0.17
VPS53-218ENST00000575207 CNOT10Q9H9A5 744 aaKnown RBP14□□□□□ -0.17
VPS53-218ENST00000575207 A0A087WZY1 265 aa13.99□□□□□ -0.17
VPS53-218ENST00000575207 CLPSL1A2RUU4 121 aa13.99□□□□□ -0.17
VPS53-218ENST00000575207 NCF1BA6NI72 391 aaPredicted RBP13.99□□□□□ -0.17
VPS53-218ENST00000575207 NCF1CA8MVU1 366 aaPredicted RBP13.99□□□□□ -0.17
VPS53-218ENST00000575207 NCF1P14598 390 aaPredicted RBP13.99□□□□□ -0.17
VPS53-218ENST00000575207 RAG2P55895 527 aa13.99□□□□□ -0.17
VPS53-218ENST00000575207 SARNPP82979 210 aaKnown RBP13.99□□□□□ -0.17
VPS53-218ENST00000575207 DDX39BQ13838 428 aaKnown RBP13.99□□□□□ -0.17
VPS53-218ENST00000575207 C1QTNF12Q5T7M4 302 aa13.99□□□□□ -0.17
VPS53-218ENST00000575207 CPTPQ5TA50 214 aa13.99□□□□□ -0.17
VPS53-218ENST00000575207 FBXW9Q5XUX1 488 aa13.99□□□□□ -0.17
VPS53-218ENST00000575207 FBXO30Q8TB52 745 aa13.99□□□□□ -0.17
VPS53-218ENST00000575207 C1orf54Q8WWF1 131 aa13.99□□□□□ -0.17
VPS53-218ENST00000575207 PPP1R14AQ96A00 147 aa13.99□□□□□ -0.17
VPS53-218ENST00000575207 TMEM79Q9BSE2 394 aa13.99□□□□□ -0.17
VPS53-218ENST00000575207 ZNF69Q9UC07 566 aa13.99□□□□□ -0.17
VPS53-218ENST00000575207 PHGDHO43175 533 aaKnown RBP13.98□□□□□ -0.17
VPS53-218ENST00000575207 MTHFD2P13995 350 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 ENPP1P22413 925 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 NAP1L1P55209 391 aaKnown RBP13.98□□□□□ -0.17
VPS53-218ENST00000575207 C17orf67Q0P5P2 114 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 ADRM1Q16186 407 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 FBXO48Q5FWF7 155 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 ADAMTSL2Q86TH1 951 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 MARCH3Q86UD3 253 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 TRABD2AQ86V40 505 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 LILRA2Q8N149 483 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 UBL4BQ8N7F7 174 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 OR4N2Q8NGD1 307 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms