RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TNFSF11O14788 317 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 HS3ST1O14792 307 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 OPN1LWP04000 364 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 PSMB1P20618 241 aaKnown RBP18.82■□□□□ 0.6
VPS53-216ENST00000574029 LCN1P31025 176 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 ZNF41P51814 821 aaPredicted RBP18.82■□□□□ 0.6
VPS53-216ENST00000574029 PRKAG1P54619 331 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 CFAP157Q5JU67 520 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 EXOSC6Q5RKV6 272 aaKnown RBP18.82■□□□□ 0.6
VPS53-216ENST00000574029 FIGNL1Q6PIW4 674 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 WFDC8Q8IUA0 241 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 GATSQ8NAP1 163 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 SLC16A11Q8NCK7 471 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 OR6Y1Q8NGX8 325 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 POC1BQ8TC44 478 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 ZBED6CLQ96FA7 236 aaPredicted RBP18.82■□□□□ 0.6
VPS53-216ENST00000574029 MS4A4EQ96PG1 132 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 CCT7Q99832 543 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 IQCGQ9H095 443 aaKnown RBP18.82■□□□□ 0.6
VPS53-216ENST00000574029 REEP4Q9H6H4 257 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 LRTM1Q9HBL6 345 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 C1orf109Q9NX04 203 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 PTGDR2Q9Y5Y4 395 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 SLC28A1O00337 649 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 TUBBP07437 444 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 AGTR1P30556 359 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 MANFP55145 182 aaKnown RBP18.81■□□□□ 0.6
VPS53-216ENST00000574029 VSNL1P62760 191 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 PPP2R2BQ00005 443 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 PDE7AQ13946 482 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 CAPRIN1Q14444 709 aaKnown RBP18.81■□□□□ 0.6
VPS53-216ENST00000574029 DUSP5Q16690 384 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 CCDC153Q494R4 210 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 HBMQ6B0K9 141 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 CLEC6AQ6EIG7 209 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 MFSD12Q6NUT3 480 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 ZCCHC12Q6PEW1 402 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 STK32CQ86UX6 486 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 TRABD2AQ86V40 505 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 MISPQ8IVT2 679 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 FBXO30Q8TB52 745 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 PPCDCQ96CD2 204 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 KLHDC3Q9BQ90 382 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 UBQLN4Q9NRR5 601 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 ACSS1Q9NUB1 689 aaPredicted RBP18.81■□□□□ 0.6
VPS53-216ENST00000574029 FBXO34Q9NWN3 711 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 OXSMQ9NWU1 459 aa18.81■□□□□ 0.6
VPS53-216ENST00000574029 A0A1W2PQD3 144 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 RGS14O43566 566 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 PLIN3O60664 434 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 NID1P14543 1247 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 SDC1P18827 310 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 PDSS1Q5T2R2 415 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 GTF2IRD2BQ6EKJ0 949 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 RNF165Q6ZSG1 346 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 Q6ZSR9 355 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 GTF2IRD2Q86UP8 949 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 OR2T11Q8NH01 316 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 OSTF1Q92882 214 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 SH3YL1Q96HL8 342 aaPredicted RBP18.8■□□□□ 0.6
VPS53-216ENST00000574029 KLHL15Q96M94 604 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 C12orf49Q9H741 205 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 TMEM185BQ9H7F4 350 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 SH3BP4Q9P0V3 963 aa18.8■□□□□ 0.6
VPS53-216ENST00000574029 AKAP10O43572 662 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 ALOX5P09917 674 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 LINGO3P0C6S8 592 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 ME2P23368 584 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 SERPINB4P48594 390 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 ATP5J2P56134 94 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 ZNF844Q08AG5 666 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 CD226Q15762 336 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 ADAM5Q6NVV9 412 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 SZRD1Q7Z422 152 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 LILRA2Q8N149 483 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 B4GALNT2Q8NHY0 566 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 AKAP1Q92667 903 aaKnown RBP eCLIP18.79■□□□□ 0.65e-12■■■■■ 33.4
VPS53-216ENST00000574029 C16orf58Q96GQ5 468 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 TSSK3Q96PN8 268 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 PPCSQ9HAB8 311 aa18.79■□□□□ 0.6
VPS53-216ENST00000574029 SCDO00767 359 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 GCM2O75603 506 aaPredicted RBP18.78■□□□□ 0.6
VPS53-216ENST00000574029 SOX30O94993 753 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 HSPA4LO95757 839 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 PABPC4LP0CB38 370 aaKnown RBP18.78■□□□□ 0.6
VPS53-216ENST00000574029 CPA3P15088 417 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 HPGDP15428 266 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 SHC1P29353 583 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 CRHR1P34998 444 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 EIF1P41567 113 aaKnown RBP18.78■□□□□ 0.6
VPS53-216ENST00000574029 CARD18P57730 90 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 ZNF239Q16600 458 aaKnown RBP18.78■□□□□ 0.6
VPS53-216ENST00000574029 RFTN2Q52LD8 501 aaPredicted RBP18.78■□□□□ 0.6
VPS53-216ENST00000574029 CCNJQ5T5M9 372 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 COX18Q8N8Q8 333 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 STEAP2Q8NFT2 490 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 RNF128Q8TEB7 428 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 UBLCP1Q8WVY7 318 aaPredicted RBP18.78■□□□□ 0.6
VPS53-216ENST00000574029 ROBO4Q8WZ75 1007 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 S100PBPQ96BU1 408 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms