RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PITX2Q99697 317 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 EDEM2Q9BV94 578 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 RBCK1Q9BYM8 510 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 SEMA4CQ9C0C4 833 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 OR8D2Q9GZM6 311 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 RIBC2Q9H4K1 309 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 POLR1BQ9H9Y6 1135 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 TMEFF2Q9UIK5 374 aaPredicted RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 NDRG4Q9ULP0 352 aaKnown RBP7.37□□□□□ -1.23
VPS39-213ENST00000570062 PCDHGB6Q9Y5F9 930 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 PCDHGA3Q9Y5H0 932 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 KCNE3Q9Y6H6 103 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 DMDP11532 3685 aa7.37□□□□□ -1.23
VPS39-213ENST00000570062 ANKRD11Q6UB99 2663 aaPredicted RBP7.36□□□□□ -1.23
VPS39-213ENST00000570062 TECTAO75443 2155 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 DNAH14Q0VDD8 3507 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 SH3D21A4FU49 640 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 SERINC4A6NH21 518 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 SAGE2PA6NJ88 616 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 IDSB3KWA1 339 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 NPIPB9F8W1W9 429 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 CDK2AP1O14519 115 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 CDX4O14627 284 aaPredicted RBP7.36□□□□□ -1.23
VPS39-213ENST00000570062 EIF4E2O60573 245 aaKnown RBP7.36□□□□□ -1.23
VPS39-213ENST00000570062 NME6O75414 186 aaPredicted RBP7.36□□□□□ -1.23
VPS39-213ENST00000570062 ZFAND5O76080 213 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 DDAH2O95865 285 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 IGF2P01344 180 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 UBTFL6P0CB48 400 aaPredicted RBP7.36□□□□□ -1.23
VPS39-213ENST00000570062 TBXA2RP21731 343 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 PRKACGP22612 351 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 ELAVL4P26378 380 aaKnown RBP7.36□□□□□ -1.23
VPS39-213ENST00000570062 IL12BP29460 328 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 SLC5A2P31639 672 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 STAT5AP42229 794 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 HLCSP50747 726 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 GPR143P51810 404 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 IL1RL1Q01638 556 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 PIN1Q13526 163 aaPredicted RBP7.36□□□□□ -1.23
VPS39-213ENST00000570062 FGFBP1Q14512 234 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 NPTX1Q15818 432 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 ZIK1Q3SY52 487 aaPredicted RBP7.36□□□□□ -1.23
VPS39-213ENST00000570062 ENTPD8Q5MY95 495 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 ZNF770Q6IQ21 691 aaPredicted RBP7.36□□□□□ -1.23
VPS39-213ENST00000570062 ULK3Q6PHR2 472 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 FIGNL1Q6PIW4 674 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 ZNF730Q6ZMV8 503 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 DGAT2L6Q6ZPD8 337 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 COX15Q7KZN9 410 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 CPEB2Q7Z5Q1 589 aaKnown RBP7.36□□□□□ -1.23
VPS39-213ENST00000570062 TSEN54Q7Z6J9 526 aaKnown RBP7.36□□□□□ -1.23
VPS39-213ENST00000570062 ANKRD37Q7Z713 158 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 TMEM179BQ7Z7N9 219 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 VRK2Q86Y07 508 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 P3H2Q8IVL5 708 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 SLC34A3Q8N130 599 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 ZNF786Q8N393 782 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 CLDN22Q8N7P3 220 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 BCORP1Q8N888 145 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 SUMF1Q8NBK3 374 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 AQP11Q8NBQ7 271 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 PRSS33Q8NF86 280 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 B3GNT7Q8NFL0 401 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 TSPAN14Q8NG11 270 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 OR52J3Q8NH60 311 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 WDR36Q8NI36 951 aaKnown RBP7.36□□□□□ -1.23
VPS39-213ENST00000570062 PIGXQ8TBF5 258 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 ADAMTS16Q8TE57 1224 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 ZNF721Q8TF20 911 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 PIK3R3Q92569 461 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 DIO2Q92813 273 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 OSTF1Q92882 214 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 ZNF566Q969W8 418 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 TMCO6Q96DC7 493 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 ABHD17AQ96GS6 310 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 SLC41A3Q96GZ6 507 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 CRB3Q9BUF7 120 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 ITPAQ9BY32 194 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 SLC19A3Q9BZV2 496 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 NDEL1Q9GZM8 345 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 ANKRA2Q9H9E1 313 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 C12orf10Q9HB07 376 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 SEMA4GQ9NTN9 838 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 OCIAD1Q9NX40 245 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 IMPAD1Q9NX62 359 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 UBAP1Q9NZ09 502 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 NCDNQ9UBB6 729 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 RPS6KB2Q9UBS0 482 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 PADI1Q9ULC6 663 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 R4GN57 208 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 TMEM131Q92545 1883 aa7.36□□□□□ -1.23
VPS39-213ENST00000570062 LOC102723996A0A087X1L8 192 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 CCDC187A0A096LP49 1063 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 MED19A0JLT2 244 aaPredicted RBP7.35□□□□□ -1.23
VPS39-213ENST00000570062 GXYLT2A0PJZ3 443 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 IRGMA1A4Y4 181 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 TRIM64A6NGJ6 449 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 PRAMEF25A6NGN4 478 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 A6NHS1 94 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 OR6C70A6NIJ9 312 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms