RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 FBXO34Q9NWN3 711 aa15.45■□□□□ 0.06
VPS9D1-203ENST00000563798 PROCRQ9UNN8 238 aa15.45■□□□□ 0.06
VPS9D1-203ENST00000563798 VDAC3Q9Y277 283 aa15.45■□□□□ 0.06
VPS9D1-203ENST00000563798 SHISA8B8ZZ34 492 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 SS18L1O75177 396 aaPredicted RBP15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 HMGN2P05204 90 aaKnown RBP15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 ARRB2P32121 409 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 SLC6A8P48029 635 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 POU6F2P78424 691 aaPredicted RBP15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 SGCBQ16585 318 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 C6orf136Q5SQH8 315 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 ESPNLQ6ZVH7 1005 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 MTERF4Q7Z6M4 381 aaKnown RBP15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 KRTAP1-3Q8IUG1 177 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 RIMKLAQ8IXN7 391 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 OR7A2PQ8NGA2 310 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 OR6K3Q8NGY3 331 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 TCP10LQ8TDR4 215 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 OR5P2Q8WZ92 322 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 MECRQ9BV79 373 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 GLRX2Q9NS18 164 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 ZCCHC3Q9NUD5 404 aaKnown RBP15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 KLHL28Q9NXS3 571 aa15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 FLNAP21333 2647 aaKnown RBP15.44■□□□□ 0.06
VPS9D1-203ENST00000563798 SCDO00767 359 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 EIF1AYO14602 144 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 PEX11AO75192 247 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 LINGO3P0C6S8 592 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 LAMP1P11279 417 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 NID1P14543 1247 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 HPGDP15428 266 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 EIF1P41567 113 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 EIF1AXP47813 144 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 C21orf58P58505 322 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 CD226Q15762 336 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 ATP6AP1LQ52LC2 224 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 CDC73Q6P1J9 531 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 SZRD1Q7Z422 152 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 GALNT10Q86SR1 603 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 LRRC75A-AS1Q8N1F1 130 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 WFDC11Q8NEX6 87 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 OR56A1Q8NGH5 318 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 OR10D3Q8NH80 312 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 B4GALNT2Q8NHY0 566 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 FBXO30Q8TB52 745 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 POC1BQ8TC44 478 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 C3orf30Q96M34 536 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 NPAS1Q99742 590 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 MED18Q9BUE0 208 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 TMEM109Q9BVC6 243 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 ACTRT3Q9BYD9 372 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 HOXD1Q9GZZ0 328 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 ATAD3AQ9NVI7 634 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 C6orf203Q9P0P8 240 aaPredicted RBP15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 EMC9Q9Y3B6 208 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 ACTL7BQ9Y614 415 aa15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 NIPBLQ6KC79 2804 aaeCLIP15.43■□□□□ 0.06
VPS9D1-203ENST00000563798 TYROBPO43914 113 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 GMFGO60234 142 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 BPGMP07738 259 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 KRT16P08779 473 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 PPP3CBP16298 524 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 PRPS1L1P21108 318 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 LOXP28300 417 aaPredicted RBP15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 ELK4P28324 431 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 ADH6P28332 368 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 ETV4P43268 484 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 ZNF41P51814 821 aaPredicted RBP15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 VSNL1P62760 191 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 LASP1Q14847 261 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 PTGR1Q14914 329 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 LSM12Q3MHD2 195 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 KLHL26Q53HC5 615 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 CCNJQ5T5M9 372 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 SHEQ5VZ18 495 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 ZCCHC23Q6ZST2 131 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 GATSQ8NAP1 163 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 OR2V1Q8NHB1 315 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 SFXN5Q8TD22 340 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 AENQ8WTP8 325 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 CDS1Q92903 461 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 MOAP1Q96BY2 351 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 RNF145Q96MT1 663 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 GPATCH2Q9NW75 528 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 GIMAP2Q9UG22 337 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 ZDHHC2Q9UIJ5 367 aa15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 MCTS1Q9ULC4 181 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-203ENST00000563798 A0A0J9YW62 118 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 NPIPB9F8W1W9 429 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 SPAG7O75391 227 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 SLU7O95391 586 aaKnown RBP15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 HOXB4P17483 251 aaPredicted RBP15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 EFNA1P20827 205 aaPredicted RBP15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 KCNJ5P48544 419 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 CCT3P49368 545 aaKnown RBP15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 SUMO3P55854 103 aaPredicted RBP15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 SMU1Q2TAY7 513 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 PDSS1Q5T2R2 415 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 IL23RQ5VWK5 629 aa15.41■□□□□ 0.06
VPS9D1-203ENST00000563798 EMBQ6PCB8 327 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms