RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ARRDC5A6NEK1 342 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 QSOX1O00391 747 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 SURF4O15260 269 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 OR7A10O76100 309 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 SRPRAP08240 638 aaKnown RBP11.5□□□□□ -0.57
LDLR-205ENST00000557933 ACADMP11310 421 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 LAG3P18627 525 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 RPL3P39023 403 aaKnown RBP11.5□□□□□ -0.57
LDLR-205ENST00000557933 NAA10P41227 235 aaPredicted RBP11.5□□□□□ -0.57
LDLR-205ENST00000557933 ATP12AP54707 1039 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 LGALSLQ3ZCW2 172 aaPredicted RBP11.5□□□□□ -0.57
LDLR-205ENST00000557933 TP53I3Q53FA7 332 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 CXXC5Q7LFL8 322 aaKnown RBP11.5□□□□□ -0.57
LDLR-205ENST00000557933 TCEAL8Q8IYN2 117 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 THAP4Q8WY91 577 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 HYLS1Q96M11 299 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 SOSTQ9BQB4 213 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 SEMA4CQ9C0C4 833 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 SLC25A18Q9H1K4 315 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 OR51J1Q9H342 316 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 SPHK2Q9NRA0 654 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 TAS2R7Q9NYW3 318 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 AHSPQ9NZD4 102 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 ACAD8Q9UKU7 415 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 POLHQ9Y253 713 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 FAM171A2A8MVW0 826 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 LGALS8O00214 317 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 STK25O00506 426 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 PROM1O43490 865 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 FGBP02675 491 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 TCRBP04435 133 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 WNT1P04628 370 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 ITGB8P26012 769 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 STOMP27105 288 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 ARHGDIBP52566 201 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 EFNB1P98172 346 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 SRSF5Q13243 272 aaKnown RBP11.5□□□□□ -0.57
LDLR-205ENST00000557933 CDONQ4KMG0 1287 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 SFXN4Q6P4A7 337 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 THSD4Q6ZMP0 1018 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 TOMM5Q8N4H5 51 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 FBXL6Q8N531 539 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 OR5J2Q8NH18 312 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 ARRDC3Q96B67 414 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 DTD2Q96FN9 168 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 C4orf36Q96KX1 117 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 LRRC3BQ96PB8 259 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 DDOQ99489 341 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 AIF1LQ9BQI0 150 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 ZNF649Q9BS31 505 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 OR10A4Q9H209 315 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 BRD7Q9NPI1 651 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 ZNF346Q9UL40 294 aaKnown RBP11.5□□□□□ -0.57
LDLR-205ENST00000557933 ING4Q9UNL4 249 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 HIDE1A8MVS5 230 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 PSMB10P40306 273 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 MAPK9P45984 424 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 OMPP47874 163 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 TGM3Q08188 693 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 C19orf57Q0VDD7 668 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 PLA1AQ53H76 456 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 AADACL4Q5VUY2 407 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 FAM46CQ5VWP2 391 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 ZDHHC20Q5W0Z9 365 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 MZT2AQ6P582 158 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 FTMTQ8N4E7 242 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 ZNF433Q8N7K0 673 aaPredicted RBP11.49□□□□□ -0.57
LDLR-205ENST00000557933 GALNT11Q8NCW6 608 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 PIGXQ8TBF5 258 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 TIFAQ96CG3 184 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 DERL3Q96Q80 235 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 OR7D2Q96RA2 312 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 SLC38A1Q9H2H9 487 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 FN3KQ9H479 309 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 EXOSC1Q9Y3B2 195 aaKnown RBP11.49□□□□□ -0.57
LDLR-205ENST00000557933 IGKV1-8A0A0C4DH67 115 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 IDSB3KWA1 339 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 PRRT4C9JH25 899 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 LRRN3E7EW58 273 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 GMDSO60547 372 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 FZD7O75084 574 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 UCHL1P09936 223 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 ZGLP1P0C6A0 271 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 UBL4AP11441 157 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 DNASE1P24855 282 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 ACADLP28330 430 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 FGF9P31371 208 aaPredicted RBP11.49□□□□□ -0.57
LDLR-205ENST00000557933 PPM1AP35813 382 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 PITPNBP48739 271 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 BTN1A1Q13410 526 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 ELOAQ14241 798 aaKnown RBP11.49□□□□□ -0.57
LDLR-205ENST00000557933 MELKQ14680 651 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 ODF4Q2M2E3 257 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 FAM111BQ6SJ93 734 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 WDR88Q6ZMY6 472 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 ZNF767PQ75MW2 155 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 BPHLQ86WA6 291 aaPredicted RBP11.49□□□□□ -0.57
LDLR-205ENST00000557933 OR13C2Q8NGS9 318 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 SUN3Q8TAQ9 357 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 ZCCHC10Q8TBK6 192 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms