RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 SMUG1Q53HV7 270 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 SLC22A10Q63ZE4 541 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 ABHD17CQ6PCB6 329 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 PXKQ7Z7A4 578 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 MEX3DQ86XN8 651 aaKnown RBP15.18■□□□□ 0.02
SHMT2-232ENST00000557487 CCDC116Q8IYX3 515 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 GPR135Q8IZ08 494 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 MS4A15Q8N5U1 240 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 ZNF655Q8N720 491 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-232ENST00000557487 SLC2A12Q8TD20 617 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 RAB7BQ96AH8 199 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 ELP4Q96EB1 424 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 ZSWIM3Q96MP5 696 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 CMTM3Q96MX0 182 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 SORCS2Q96PQ0 1159 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 MTHFD2LQ9H903 347 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-232ENST00000557487 NUDT15Q9NV35 164 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 UCKL1Q9NWZ5 548 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 CES1P1Q9UKY3 287 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 RASD1Q9Y272 281 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 WNT6Q9Y6F9 365 aa15.18■□□□□ 0.02
SHMT2-232ENST00000557487 TEX13CA0A0J9YWL9 993 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 LOC105371267A0A1B0GV96 52 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 FAM86C2PA6NEL3 165 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 EEF1E1O43324 174 aaKnown RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 LANCL1O43813 399 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 MOSPD3O75425 235 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 SERPINA3P01011 423 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 SAGP10523 405 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 F3P13726 295 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 ATP5A1P25705 553 aaKnown RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 PBX2P40425 430 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 EPHA4P54764 986 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 HTRA4P83105 476 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 INSL4Q14641 139 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 FAM214AQ32MH5 1076 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 HNRNPA1L2Q32P51 320 aaKnown RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 TOR2AQ5JU69 321 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 C6orf132Q5T0Z8 1188 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 TOMM5Q8N4H5 51 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 SLC44A3Q8N4M1 653 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 ACOT4Q8N9L9 421 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 OR2L5Q8NG80 312 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 OR11H7Q8NGC8 314 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 TRMT10AQ8TBZ6 339 aaKnown RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 MS4A6EQ96DS6 147 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 TCEAL4Q96EI5 215 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 C16orf58Q96GQ5 468 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 SAMD8Q96LT4 415 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 NECTIN4Q96NY8 510 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 SARGQ9BW04 601 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 QRSL1Q9H0R6 528 aaKnown RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 PPIL3Q9H2H8 161 aaKnown RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 CLEC4MQ9H2X3 399 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 ISG20L2Q9H9L3 353 aaKnown RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 PRDM7Q9NQW5 492 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 LYARQ9NX58 379 aaKnown RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 NTMQ9P121 344 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 ZNF222Q9UK12 451 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 CHST2Q9Y4C5 530 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 KCNE3Q9Y6H6 103 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 TBC1D3KA0A087X1G2 549 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 TRAV1-2A0A0B4J238 106 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 TBC1D3BA6NDS4 549 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 TBC1D3FA6NER0 549 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 OR5K3A6NET4 321 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 TUBAL3A6NHL2 446 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 CTDSPLO15194 276 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 GSTZ1O43708 216 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 FZD7O75084 574 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 STX11O75558 287 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 SC5DO75845 299 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 FGF18O76093 207 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 AIFM1O95831 613 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 RAB28P51157 221 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 ACTC1P68032 377 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 ACTA1P68133 377 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 DYRK1AQ13627 763 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 DHCR24Q15392 516 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 SLC36A2Q495M3 483 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 CLLU1Q5K131 121 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 TBC1D3GQ6DHY5 549 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 TMCO2Q7Z6W1 182 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 SAMD14Q8IZD0 417 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 LNX2Q8N448 690 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 HDDC3Q8N4P3 179 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 ADAMTS15Q8TE58 950 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 AICDAQ9GZX7 198 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 ERVMER34-1Q9H9K5 563 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 HCFC1R1Q9NWW0 138 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 SLC23A2Q9UGH3 650 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 ZNF443Q9Y2A4 671 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 YBX2Q9Y2T7 364 aaKnown RBP15.17■□□□□ 0.02
SHMT2-232ENST00000557487 ATG4BQ9Y4P1 393 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 IRAK3Q9Y616 596 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 ZNF780BQ9Y6R6 833 aa15.17■□□□□ 0.02
SHMT2-232ENST00000557487 LRRK1Q38SD2 2015 aa15.16■□□□□ 0.02
SHMT2-232ENST00000557487 MEIKINA0A087WXM9 373 aa15.16■□□□□ 0.02
SHMT2-232ENST00000557487 A0A0G2JK05 382 aa15.16■□□□□ 0.02
SHMT2-232ENST00000557487 PGRMC2O15173 223 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms