RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 CALM3P0DP25 149 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 HLA-EP13747 358 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 OXTRP30559 389 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 CAPGP40121 348 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ID1P41134 155 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ALDH3B1P43353 468 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 BRCC3P46736 316 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ZFP36L2P47974 494 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 GPC3P51654 580 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 CNN1P51911 297 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 GEMP55040 296 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 YBEYP58557 167 aaPredicted RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 OSTNP61366 133 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 HERV-K104P63124 156 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 KDSRQ06136 332 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 HSPA14Q0VDF9 509 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 TWF1Q12792 350 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 PPP1R8Q12972 351 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 SRSF6Q13247 344 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 RIGQ13278 110 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 DMC1Q14565 340 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ZNF146Q15072 292 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 TRADDQ15628 312 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 MAPK6Q16659 721 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ECSCRQ19T08 205 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 KNOP1Q1ED39 458 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 WSCD2Q2TBF2 565 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 MPPE1Q53F39 396 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 C1orf189Q5VU69 101 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 NEPROQ6NW34 567 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 CDHR3Q6ZTQ4 885 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 STXBP4Q6ZWJ1 553 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 SH2D6Q7Z4S9 175 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 KCNMB4Q86W47 210 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 FAM131BQ86XD5 332 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ZNF440Q8IYI8 595 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 NEK11Q8NG66 645 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 OR6M1Q8NGM8 313 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 URGCPQ8TCY9 931 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 MIPOL1Q8TD10 442 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 NPRL2Q8WTW4 380 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 PCNPQ8WW12 178 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 C11orf52Q96A22 123 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 CCDC47Q96A33 483 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 MRPL24Q96A35 216 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 SLCO4A1Q96BD0 722 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ANKRD9Q96BM1 317 aaPredicted RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 MRPL53Q96EL3 112 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 DTD2Q96FN9 168 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 GPR137Q96N19 417 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 SPATA13Q96N96 652 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ANKRD27Q96NW4 1050 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 TNFRSF13CQ96RJ3 184 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 RAB40CQ96S21 281 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 SPAG8Q99932 426 aaPredicted RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 VGLL1Q99990 258 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 CABLES2Q9BTV7 478 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 STRADBQ9C0K7 418 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 WWP1Q9H0M0 922 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ABCG4Q9H172 646 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 SLC26A1Q9H2B4 701 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 DPEP3Q9H4B8 488 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 WDR41Q9HAD4 459 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ZNF302Q9NR11 478 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 GDF3Q9NR23 364 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 PIGVQ9NUD9 493 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ANO10Q9NW15 660 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 TRIM10Q9UDY6 481 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 FETUBQ9UGM5 382 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 IL19Q9UHD0 177 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ADAM28Q9UKQ2 775 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 TSPAN16Q9UKR8 245 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 CCL26Q9Y258 94 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 MRPS2Q9Y399 296 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 STRAPQ9Y3F4 350 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 SLCO1B1Q9Y6L6 691 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 NIPBLQ6KC79 2804 aaeCLIP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 PCNX3Q9H6A9 2034 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 PKDREJQ9NTG1 2253 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 AKAP6Q13023 2319 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 IGLV4-3A0A075B6K6 122 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 IGHV3OR16-10A0A075B7F0 116 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 A0A087WWV3 80 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 A0A0D9SFI3 127 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 SH3PXD2BA1X283 911 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 IGLON5A6NGN9 336 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ARL5CA6NH57 179 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 FAM47DPA6NHR8 397 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 CCDC69A6NI79 296 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 SLC9B1P1A6NJY1 282 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 YJEFN3A6XGL0 299 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 A8MXK9 166 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 EPM2AB3EWF7 344 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 NEDD8-MDP1E9PL57 170 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 EEF2KO00418 725 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 FBP2O00757 339 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 CHEK1O14757 476 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 ZBTB5O15062 677 aa1.24□□□□□ -2.21
PRPF39-208ENST00000554785 CASC3O15234 703 aaKnown RBP1.24□□□□□ -2.21
PRPF39-208ENST00000554785 RNF113AO15541 343 aaKnown RBP1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms