RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 THY1P04216 161 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 IGHV4-34P06331 123 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 INHBBP09529 407 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 HNRNPCL4P0DMR1 293 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 ERGP11308 486 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 MAKP20794 623 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 DRD1P21728 446 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 PSMB10P40306 273 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 MTNR1AP48039 350 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 FZD2Q14332 565 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 NCF4Q15080 339 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 PYDC2Q56P42 97 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 VWA2Q5GFL6 755 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 ARMC4Q5T2S8 1044 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 MRM1Q6IN84 353 aaKnown RBP5.2□□□□□ -1.58
LIMA1-215ENST00000552823 THSD4Q6ZMP0 1018 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 WDR88Q6ZMY6 472 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 USP43Q70EL4 1123 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 CCDC80Q76M96 950 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 SDR9C7Q8NEX9 313 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 KBTBD8Q8NFY9 601 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 OR13C5Q8NGS8 318 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 OR2I1PQ8NGU4 316 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 PHOSPHO1Q8TCT1 267 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 SPRYD4Q8WW59 207 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-215ENST00000552823 TM9SF4Q92544 642 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 TSLPQ969D9 159 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 SLC22A18Q96BI1 424 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 SLC25A36Q96CQ1 311 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 NECTIN4Q96NY8 510 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 NEDD4LQ96PU5 975 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 OR52D1Q9H346 318 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 RPS6KB2Q9UBS0 482 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 MUTYHQ9UIF7 546 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 HSPE1-MOB4S4R3N1 261 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 A0A1W2PRG6 482 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 METTL15A6NJ78 407 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 SOBPA7XYQ1 873 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF701M0R085 212 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-215ENST00000552823 SNPHO15079 494 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 GPR75O95800 540 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 GABRB1P18505 474 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 TNFSF8P32971 234 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 EIF2DP41214 584 aaKnown RBP5.19□□□□□ -1.58
LIMA1-215ENST00000552823 OR1D5P58170 312 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 C21orf58P58505 322 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 POU6F2P78424 691 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-215ENST00000552823 RELAQ04206 551 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 FAM53BQ14153 422 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 E2F2Q14209 437 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 TBCEQ15813 527 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-215ENST00000552823 DDI2Q5TDH0 399 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 SLX4IPQ5VYV7 408 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 ASB18Q6ZVZ8 466 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 CADM3Q8N126 398 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 RCBTB1Q8NDN9 531 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 OR8K3Q8NH51 312 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 RASSF5Q8WWW0 418 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 RIT1Q92963 219 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 C10orf90Q96M02 699 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 TSSK2Q96PF2 358 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 NELL2Q99435 816 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 GABRG3Q99928 467 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 BEX1Q9HBH7 125 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 TMEM27Q9HBJ8 222 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 NECTIN3Q9NQS3 549 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 PRTFDC1Q9NRG1 225 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 ATXN7L1Q9ULK2 861 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-215ENST00000552823 ADAM18Q9Y3Q7 739 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 DNAJC13O75165 2243 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 A0A0B4J203 849 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 CXorf51AA0A1B0GTR3 108 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 RHPN2P1A8MT19 583 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 C11orf98E9PRG8 122 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 GTPBP1O00178 669 aaKnown RBP5.19□□□□□ -1.58
LIMA1-215ENST00000552823 ADAM11O75078 769 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 ATP6V1G1O75348 118 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 STX11O75558 287 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 RFPL3O75679 317 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 PLGP00747 810 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-215ENST00000552823 HTR2AP28223 471 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 NDUFS1P28331 727 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 TEAD1P28347 426 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 NR4A2P43354 598 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 INPP1P49441 399 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 SNTA1Q13424 505 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 TBC1D25Q3MII6 688 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 TP53I3Q53FA7 332 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 IDNKQ5T6J7 187 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 CCBE1Q6UXH8 406 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-215ENST00000552823 TMPRSS11AQ6ZMR5 421 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 CXXC5Q7LFL8 322 aaKnown RBP5.19□□□□□ -1.58
LIMA1-215ENST00000552823 CDK20Q8IZL9 346 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 KDM8Q8N371 416 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 VWA5B2Q8N398 1253 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 MFSD4AQ8N468 514 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 TMEM99Q8N816 258 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 OR52L1Q8NGH7 329 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 OR52E2Q8NGJ4 325 aa5.19□□□□□ -1.58
LIMA1-215ENST00000552823 OR4C3Q8NH37 302 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms