RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 EMCNQ9ULC0 261 aa11.49□□□□□ -0.57
PTCH1-221ENST00000550914 CLEC4AQ9UMR7 237 aa11.49□□□□□ -0.57
PTCH1-221ENST00000550914 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 A0A1W2PQD3 144 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 GOLGA8RI6L899 631 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 CXCL13O43927 109 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 GLRA3O75311 464 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 SEC22BO75396 215 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 SOX30O94993 753 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 KCNK2O95069 426 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 AGTR1P30556 359 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 EIF1P41567 113 aaKnown RBP11.48□□□□□ -0.57
PTCH1-221ENST00000550914 SERPINB4P48594 390 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 ATP5J2P56134 94 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 SLC18A2Q05940 514 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 HSPB3Q12988 150 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 CCDC153Q494R4 210 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 CFAP157Q5JU67 520 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 HBMQ6B0K9 141 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 PPP4R4Q6NUP7 873 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 RNF165Q6ZSG1 346 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 TRABD2AQ86V40 505 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 NUP43Q8NFH3 380 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 SPATA3Q8NHX4 192 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 MZB1Q8WU39 189 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 SLC9A6Q92581 669 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 GIMAP5Q96F15 307 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 EGLN2Q96KS0 407 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 FCRL1Q96LA6 429 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 C16orf45Q96MC5 204 aaPredicted RBP11.48□□□□□ -0.57
PTCH1-221ENST00000550914 RNF145Q96MT1 663 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 MDFIQ99750 246 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 USB1Q9BQ65 265 aaKnown RBP11.48□□□□□ -0.57
PTCH1-221ENST00000550914 GP6Q9HCN6 339 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 TIGARQ9NQ88 270 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 C1orf109Q9NX04 203 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 SNX8Q9Y5X2 465 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 CR1P17927 2039 aa11.48□□□□□ -0.57
PTCH1-221ENST00000550914 A0A0J9YW62 118 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 SLC28A1O00337 649 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 SCDO00767 359 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 TNFSF11O14788 317 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 RGS14O43566 566 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 GMFGO60234 142 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 PLAUP00749 431 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 PROCP04070 461 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 NEFHP12036 1026 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 NID1P14543 1247 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 HPGDP15428 266 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 ELK4P28324 431 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 MANFP55145 182 aaKnown RBP11.47□□□□□ -0.57
PTCH1-221ENST00000550914 CARD18P57730 90 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 RPS4XP62701 263 aaKnown RBP11.47□□□□□ -0.57
PTCH1-221ENST00000550914 PDE7AQ13946 482 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 CAPRIN1Q14444 709 aaKnown RBP11.47□□□□□ -0.57
PTCH1-221ENST00000550914 RNPS1Q15287 305 aaKnown RBP11.47□□□□□ -0.57
PTCH1-221ENST00000550914 EXOSC6Q5RKV6 272 aaKnown RBP11.47□□□□□ -0.57
PTCH1-221ENST00000550914 MFSD12Q6NUT3 480 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 WFDC8Q8IUA0 241 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 SLC16A11Q8NCK7 471 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 RNF128Q8TEB7 428 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 OSTF1Q92882 214 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 CPNE4Q96A23 557 aaPredicted RBP11.47□□□□□ -0.57
PTCH1-221ENST00000550914 CIDECQ96AQ7 238 aaPredicted RBP11.47□□□□□ -0.57
PTCH1-221ENST00000550914 PPCDCQ96CD2 204 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 MTERF3Q96E29 417 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 REXO5Q96IC2 774 aaKnown RBP11.47□□□□□ -0.57
PTCH1-221ENST00000550914 KLHL15Q96M94 604 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 TACO1Q9BSH4 297 aaKnown RBP11.47□□□□□ -0.57
PTCH1-221ENST00000550914 REEP4Q9H6H4 257 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 LRTM1Q9HBL6 345 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 TNFRSF12AQ9NP84 129 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 NGBQ9NPG2 151 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 TMED5Q9Y3A6 229 aa11.47□□□□□ -0.57
PTCH1-221ENST00000550914 GJE1A6NN92 205 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 OVOL3O00110 214 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 GCM2O75603 506 aaPredicted RBP11.46□□□□□ -0.57
PTCH1-221ENST00000550914 ALOX5P09917 674 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 LINGO3P0C6S8 592 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 ACP2P11117 423 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 DDX5P17844 614 aaKnown RBP11.46□□□□□ -0.57
PTCH1-221ENST00000550914 ADH6P28332 368 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 PRKAG1P54619 331 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 ZNF844Q08AG5 666 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 TNK1Q13470 666 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 MLC1Q15049 377 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 ZNF239Q16600 458 aaKnown RBP11.46□□□□□ -0.57
PTCH1-221ENST00000550914 DUSP5Q16690 384 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 TMEM201Q5SNT2 666 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 DNAJC14Q6Y2X3 702 aaPredicted RBP11.46□□□□□ -0.57
PTCH1-221ENST00000550914 MTERF4Q7Z6M4 381 aaKnown RBP11.46□□□□□ -0.57
PTCH1-221ENST00000550914 IFT20Q8IY31 132 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 LILRA2Q8N149 483 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 GABRG1Q8N1C3 465 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 COX18Q8N8Q8 333 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 B4GALNT2Q8NHY0 566 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 POC1BQ8TC44 478 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 AKAP1Q92667 903 aaKnown RBP eCLIP11.46□□□□□ -0.57
PTCH1-221ENST00000550914 STACQ99469 402 aa11.46□□□□□ -0.57
PTCH1-221ENST00000550914 NPAS1Q99742 590 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms