RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 RFT1Q96AA3 541 aa15.24■□□□□ 0.03
CUX1-213ENST00000549414 KIAA1143Q96AT1 154 aaPredicted RBP15.24■□□□□ 0.03
CUX1-213ENST00000549414 DEFB126Q9BYW3 111 aa15.24■□□□□ 0.03
CUX1-213ENST00000549414 TP63Q9H3D4 680 aaPredicted RBP15.24■□□□□ 0.03
CUX1-213ENST00000549414 GPN2Q9H9Y4 310 aaPredicted RBP15.24■□□□□ 0.03
CUX1-213ENST00000549414 IFT46Q9NQC8 304 aa15.24■□□□□ 0.03
CUX1-213ENST00000549414 TMX2-CTNND1H3BSU7 103 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 LIPAP38571 399 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 ERVK-25P63136 954 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 ARFRP1Q13795 201 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 OR1Q1Q15612 314 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 ZNF613Q6PF04 617 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 ZNF782Q6ZMW2 699 aaPredicted RBP15.23■□□□□ 0.03
CUX1-213ENST00000549414 DGLUCYQ7Z3D6 616 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 PLXDC1Q8IUK5 500 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 SLC7A13Q8TCU3 470 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 FGF14Q92915 247 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 RBP7Q96R05 134 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 OR52A5Q9H2C5 316 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 ISPDA4D126 451 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 CD40LGP29965 261 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 PSMB10P40306 273 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 CDKN3Q16667 212 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 PYCR3Q53H96 274 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 TMEM225Q6GV28 225 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 TDHQ8IZJ6 230 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 MRPL38Q96DV4 380 aaKnown RBP15.23■□□□□ 0.03
CUX1-213ENST00000549414 SGPP1Q9BX95 441 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 TMEM185BQ9H7F4 350 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 MOV10Q9HCE1 1003 aaKnown RBP15.23■□□□□ 0.03
CUX1-213ENST00000549414 RXFP3Q9NSD7 469 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 A0A1W2PR48 441 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 LINC01565O15544 149 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 FBXO45P0C2W1 286 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 PDX1P52945 283 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 PPP2CBP62714 309 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 PPP2CAP67775 309 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 NKX3-2P78367 333 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 TNFRSF17Q02223 184 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 TCTE1Q5JU00 501 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 CARD17Q5XLA6 110 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 RIMKLAQ8IXN7 391 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 ZBTB8BQ8NAP8 495 aaPredicted RBP15.23■□□□□ 0.03
CUX1-213ENST00000549414 OR8S1Q8NH09 359 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 S100A16Q96FQ6 103 aaKnown RBP15.23■□□□□ 0.03
CUX1-213ENST00000549414 TMEM38AQ9H6F2 299 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 AGAP5A6NIR3 686 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 DUSP3P51452 185 aaPredicted RBP15.23■□□□□ 0.03
CUX1-213ENST00000549414 DPTQ07507 201 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 FAM69BQ5VUD6 431 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 TMEM64Q6YI46 380 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 SPRED2Q7Z698 418 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 SFTPA1Q8IWL2 248 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 MSRB3Q8IXL7 192 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 OR6Q1Q8NGQ2 317 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 DUS3LQ96G46 650 aaKnown RBP15.23■□□□□ 0.03
CUX1-213ENST00000549414 FOXN4Q96NZ1 517 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 NTN4Q9HB63 628 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 PLCL2Q9UPR0 1127 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 PCDHGA6Q9Y5G7 932 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 PLXNB2O15031 1838 aa15.23■□□□□ 0.03
CUX1-213ENST00000549414 LTBP1Q14766 1721 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 TRPM6Q9BX84 2022 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 RGS9O75916 674 aaPredicted RBP15.22■□□□□ 0.03
CUX1-213ENST00000549414 SLC19A1P41440 591 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 DUSP6Q16828 381 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 PGGHGQ32M88 737 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 MTFR2Q6P444 385 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 RHOXF1Q8NHV9 184 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 SFXN5Q8TD22 340 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 ELP4Q96EB1 424 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 CMKLR1Q99788 373 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 ORAI3Q9BRQ5 295 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 CNOT2Q9NZN8 540 aaKnown RBP15.22■□□□□ 0.03
CUX1-213ENST00000549414 CLEC2DQ9UHP7 191 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 TET1Q8NFU7 2136 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 SPAG17Q6Q759 2223 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 ARID1AO14497 2285 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 A0A1W2PPL8 197 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 GAPDHSO14556 408 aaPredicted RBP15.22■□□□□ 0.03
CUX1-213ENST00000549414 MAS1P04201 325 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 GSTT2BP0CG30 244 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 PKLRP30613 574 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 TPMTP51580 245 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 SMAD2Q15796 467 aaKnown RBP15.22■□□□□ 0.03
CUX1-213ENST00000549414 ADPRMQ3LIE5 342 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 SLC48A1Q6P1K1 146 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 NRTNQ99748 197 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.22■□□□□ 0.031e-6■■□□□ 13.1
CUX1-213ENST00000549414 NBASA2RRP1 2371 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 TVP23AA6NH52 213 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 ANKRD28O15084 1053 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 YES1P07947 543 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 CD38P28907 300 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 TNFRSF4P43489 277 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 HSF2Q03933 536 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 DESI1Q6ICB0 168 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 FAM109BQ6ICB4 259 aaPredicted RBP15.22■□□□□ 0.03
CUX1-213ENST00000549414 SLITRK4Q8IW52 837 aa15.22■□□□□ 0.03
CUX1-213ENST00000549414 DEFB123Q8N688 67 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms