RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 OR2T6Q8NHC8 308 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 MRGPRDQ8TDS7 321 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 SHC3Q92529 594 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 RBMXL1Q96E39 390 aaKnown RBP3.26□□□□□ -1.89
CD44-235ENST00000532339 GMPPAQ96IJ6 420 aaPredicted RBP3.26□□□□□ -1.89
CD44-235ENST00000532339 NSL1Q96IY1 281 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 TMEM237Q96Q45 408 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 SLC39A8Q9C0K1 460 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 SDCBP2Q9H190 292 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 UBQLN3Q9H347 655 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 AKIRIN1Q9H9L7 192 aaPredicted RBP3.26□□□□□ -1.89
CD44-235ENST00000532339 RDH14Q9HBH5 336 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 GPR173Q9NS66 373 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 APOBEC3BQ9UH17 382 aaKnown RBP3.26□□□□□ -1.89
CD44-235ENST00000532339 MOSPD1Q9UJG1 213 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 LSM7Q9UK45 103 aaKnown RBP3.26□□□□□ -1.89
CD44-235ENST00000532339 UBQLN1Q9UMX0 589 aaKnown RBP3.26□□□□□ -1.89
CD44-235ENST00000532339 VWFP04275 2813 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 NCOA6Q14686 2063 aaPredicted RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 TRBV5-5A0A0J9YX44 114 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 LOC100653049A0A140TA62 436 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 GTPBP10A4D1E9 387 aaKnown RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 IDSB3KWA1 339 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 C21orf140B9A014 251 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 NPIPA3F8WFD2 350 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 SLC31A1O15431 190 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 KLHL41O60662 606 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 CRCPO75575 148 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 BCAS2O75934 225 aaPredicted RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 KRT34O76011 436 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 EDN1P05305 212 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 HMBSP08397 361 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 SBK2P0C263 348 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 MCF2P10911 925 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 IDSP22304 550 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 CA6P23280 308 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 SSTR1P30872 391 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 NAMPTP43490 491 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 TSFMP43897 325 aaKnown RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 LIMK2P53671 638 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 NAPAP54920 295 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 UCP2P55851 309 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 DSCR10P59022 87 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 NOP14P78316 857 aaKnown RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 C1orf61Q13536 156 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 P2RY6Q15077 328 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 TAF13Q15543 124 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 ZBTB6Q15916 424 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 HNRNPA1L2Q32P51 320 aaKnown RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 IFI44LQ53G44 452 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 ADAMTSL4-AS1Q5T5F5 129 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 LRRC38Q5VT99 294 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 PM20D1Q6GTS8 502 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 OR6B2Q6IFH4 312 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 TTC27Q6P3X3 843 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 CNSTQ6PJW8 725 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 TMEM207Q6UWW9 146 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 SIGLEC15Q6ZMC9 328 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 PRSS42Q7Z5A4 293 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 CPEB2Q7Z5Q1 589 aaKnown RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 PTAR1Q7Z6K3 402 aaPredicted RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 SERPINA12Q8IW75 414 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 ZADH2Q8N4Q0 377 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 BCORP1Q8N888 145 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 LRTM2Q8N967 370 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 DNAAF3Q8N9W5 541 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 PSMA8Q8TAA3 256 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 CA5BP1Q8WTZ4 195 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 GIMAP5Q96F15 307 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 CDKN2AIPNLQ96HQ2 116 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 RBM41Q96IZ5 413 aaKnown RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 C4orf45Q96LM5 186 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 TSSK2Q96PF2 358 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 RBM4BQ9BQ04 359 aaKnown RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 ACBD6Q9BR61 282 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 PIGQQ9BRB3 760 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 LRRC61Q9BV99 259 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 NACA2Q9H009 215 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 POLR3FQ9H1D9 316 aaPredicted RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 RIMS4Q9H426 269 aaPredicted RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 FBXO8Q9NRD0 319 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 SLC7A10Q9NS82 523 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 IL17CQ9P0M4 197 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 KLHL8Q9P2G9 620 aaPredicted RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 WRAP73Q9P2S5 460 aaPredicted RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 FETUBQ9UGM5 382 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 CHKBQ9Y259 395 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 EXOGQ9Y2C4 368 aaKnown RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 INTS1Q8N201 2190 aaKnown RBP3.25□□□□□ -1.89
CD44-235ENST00000532339 MYH10P35580 1976 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 TRIP11Q15643 1979 aa3.25□□□□□ -1.89
CD44-235ENST00000532339 TRAV18A0A075B6X5 111 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 A0A087X0K7 114 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 IGHV4-61A0A0C4DH41 118 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 ERICH2A1L162 156 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 SMCO2A6NFE2 343 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 ANKDD1BA6NHY2 528 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 H3BMM5 538 aa3.24□□□□□ -1.89
CD44-235ENST00000532339 CYB561D2O14569 222 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms