RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 PAPD4Q6PIY7 484 aaKnown RBP19.54■□□□□ 0.72
VPS28-212ENST00000530836 VASH2Q86V25 355 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 OFCC1Q8IZS5 231 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 CLIP4Q8N3C7 705 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 ZNF527Q8NB42 609 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 ZNF555Q8NEP9 628 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 TOR1AIP2Q8NFQ8 470 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 OR10G2Q8NGC3 310 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 OR2Y1Q8NGV0 311 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 KIAA1143Q96AT1 154 aaPredicted RBP19.54■□□□□ 0.72
VPS28-212ENST00000530836 VMP1Q96GC9 406 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 CCNL2Q96S94 520 aaPredicted RBP19.54■□□□□ 0.72
VPS28-212ENST00000530836 GPR87Q9BY21 358 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 FAM117AQ9C073 453 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 ANKRD19PQ9H560 264 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 KCNE5Q9UJ90 142 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 ANKRD11Q6UB99 2663 aaPredicted RBP19.54■□□□□ 0.72
VPS28-212ENST00000530836 LOC102723996A0A087X1L8 192 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 SNAP29O95721 258 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 RAB40ALP0C0E4 278 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 F8A1P23610 371 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 KRT20P35900 424 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 TLE3Q04726 772 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 DCST1Q5T197 706 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 HSDL2Q6YN16 418 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 CHERPQ8IWX8 916 aaKnown RBP19.54■□□□□ 0.72
VPS28-212ENST00000530836 OR52J3Q8NH60 311 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 CYGBQ8WWM9 190 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 GAL3ST4Q96RP7 486 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 WFDC6Q9BQY6 131 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 GPN2Q9H9Y4 310 aaPredicted RBP19.54■□□□□ 0.72
VPS28-212ENST00000530836 UBQLN4Q9NRR5 601 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 ENOPH1Q9UHY7 261 aa19.54■□□□□ 0.72
VPS28-212ENST00000530836 TMEFF2Q9UIK5 374 aaPredicted RBP19.54■□□□□ 0.72
VPS28-212ENST00000530836 FAAHO00519 579 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 SEMA7AO75326 666 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 LIFP15018 202 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 DAPP51397 102 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 TAS2R41P59536 307 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 ST3GAL3Q11203 375 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 SRSF6Q13247 344 aaKnown RBP19.53■□□□□ 0.72
VPS28-212ENST00000530836 PIN1Q13526 163 aaPredicted RBP19.53■□□□□ 0.72
VPS28-212ENST00000530836 DNASE1L3Q13609 305 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 NPTX1Q15818 432 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 NNATQ16517 81 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 ZAR1Q86SH2 424 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 ZNF441Q8N8Z8 693 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 APCDD1LQ8NCL9 501 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 OR5L2Q8NGL0 311 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 NUBPLQ8TB37 319 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 DIO2Q92813 273 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 CNBD2Q96M20 576 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 BARD1Q99728 777 aaKnown RBP19.53■□□□□ 0.72
VPS28-212ENST00000530836 TOR3AQ9H497 397 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 ZNF556Q9HAH1 456 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 KRT84Q9NSB2 600 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 RLIMQ9NVW2 624 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 IL17BQ9UHF5 180 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 PTRH2Q9Y3E5 179 aaKnown RBP19.53■□□□□ 0.72
VPS28-212ENST00000530836 PCDHGA6Q9Y5G7 932 aa19.53■□□□□ 0.72
VPS28-212ENST00000530836 EFSO43281 561 aa19.52■□□□□ 0.72
VPS28-212ENST00000530836 KLF7O75840 302 aaPredicted RBP19.52■□□□□ 0.72
VPS28-212ENST00000530836 FOLR3P41439 243 aa19.52■□□□□ 0.72
VPS28-212ENST00000530836 RPS6KA3P51812 740 aa19.52■□□□□ 0.72
VPS28-212ENST00000530836 RPS15P62841 145 aaKnown RBP19.52■□□□□ 0.72
VPS28-212ENST00000530836 RNF4P78317 190 aa19.52■□□□□ 0.72
VPS28-212ENST00000530836 ADARB1P78563 741 aaKnown RBP19.52■□□□□ 0.72
VPS28-212ENST00000530836 FGFBP1Q14512 234 aa19.52■□□□□ 0.72
VPS28-212ENST00000530836 PDZK1Q5T2W1 519 aa19.52■□□□□ 0.72
VPS28-212ENST00000530836 WDR77Q9BQA1 342 aaPredicted RBP19.52■□□□□ 0.72
VPS28-212ENST00000530836 RHCGQ9UBD6 479 aa19.52■□□□□ 0.72
VPS28-212ENST00000530836 TESQ9UGI8 421 aaKnown RBP19.52■□□□□ 0.72
VPS28-212ENST00000530836 FARSAQ9Y285 508 aaKnown RBP19.52■□□□□ 0.72
VPS28-212ENST00000530836 ZFHX4Q86UP3 3567 aa19.52■□□□□ 0.71
VPS28-212ENST00000530836 LAMA5O15230 3695 aa19.52■□□□□ 0.71
VPS28-212ENST00000530836 CENPVL1A0A0U1RR11 272 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 OR5F1O95221 314 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 MYF6P23409 242 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 ELAVL4P26378 380 aaKnown RBP19.51■□□□□ 0.71
VPS28-212ENST00000530836 ITPKBP27987 946 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 ADH7P40394 386 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 NRG3P56975 720 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 LAPTM4AQ15012 233 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 FGD3Q5JSP0 725 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 SWT1Q5T5J6 900 aaKnown RBP19.51■□□□□ 0.71
VPS28-212ENST00000530836 BROXQ5VW32 411 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 SLC34A3Q8N130 599 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 FEVQ99581 238 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 MCHR1Q99705 422 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 FAM118AQ9NWS6 357 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 SLC35A3Q9Y2D2 325 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 POFUT2Q9Y2G5 429 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 NPIPA5A0A0B4J1W7 369 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 IGHV3-20A0A0C4DH32 117 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 NPIPA7E9PJI5 369 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 UGT2B11O75310 529 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 NPIPA8P0DM63 369 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 ITGAMP11215 1152 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 HPGDP15428 266 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 IL12BP29460 328 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms