RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 OR2T3Q8NH03 318 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 OR52J3Q8NH60 311 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 PNPT1Q8TCS8 783 aaKnown RBP3.38□□□□□ -1.87
CD44-223ENST00000526553 BADQ92934 168 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 UPRTQ96BW1 309 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 BIRC7Q96CA5 298 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 B3GALT6Q96L58 329 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 PAXXQ9BUH6 204 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 DHX33Q9H6R0 707 aaKnown RBP3.38□□□□□ -1.87
CD44-223ENST00000526553 CALHM2Q9HA72 323 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 ABCB10Q9NRK6 738 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 ANAPC11Q9NYG5 84 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 RCOR3Q9P2K3 495 aaPredicted RBP3.38□□□□□ -1.87
CD44-223ENST00000526553 RNF14Q9UBS8 474 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 Q9UF83 564 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 HPCAL4Q9UM19 191 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 RABL2BQ9UNT1 228 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 RNF115Q9Y4L5 304 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 ABCC10Q5T3U5 1492 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 ADAMTS12P58397 1594 aa3.38□□□□□ -1.87
CD44-223ENST00000526553 PTCH1Q13635 1447 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 TRBV7-9A0A0J9YWB2 115 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 TM9SF1O15321 606 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 RAMP1O60894 148 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 MBD3O95983 291 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 IQCF3P0C7M6 154 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 BCKDHAP12694 445 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 FNTAP49354 379 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 STK19P49842 368 aaPredicted RBP3.37□□□□□ -1.87
CD44-223ENST00000526553 MEOX2P50222 304 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 MFAP2P55001 183 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 RAG2P55895 527 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 TFDP1Q14186 410 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 SELPLGQ14242 412 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 MESDQ14696 234 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 PPP1R3AQ16821 1122 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 RABGAP1LQ5R372 815 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 DCST2Q5T1A1 773 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 PRR5LQ6MZQ0 368 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 BTNL3Q6UXE8 466 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 APOOLQ6UXV4 268 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 ANKRD37Q7Z713 158 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 ZCCHC7Q8N3Z6 543 aaKnown RBP3.37□□□□□ -1.87
CD44-223ENST00000526553 ZNF525Q8N782 197 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 TRMT10AQ8TBZ6 339 aaKnown RBP3.37□□□□□ -1.87
CD44-223ENST00000526553 VN1R17PQ8TDU5 208 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 OSTF1Q92882 214 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 ART4Q93070 314 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 MYLPFQ96A32 169 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 ADIPOR1Q96A54 375 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 NAP1L5Q96NT1 182 aaPredicted RBP3.37□□□□□ -1.87
CD44-223ENST00000526553 OMDQ99983 421 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 TBC1D10AQ9BXI6 508 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 NFKBIZQ9BYH8 718 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 DEFB126Q9BYW3 111 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 COMMD4Q9H0A8 199 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 SMPD3Q9NY59 655 aaPredicted RBP3.37□□□□□ -1.87
CD44-223ENST00000526553 TAS2R16Q9NYV7 291 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 MRPS33Q9Y291 106 aaKnown RBP3.37□□□□□ -1.87
CD44-223ENST00000526553 EXOSC1Q9Y3B2 195 aaKnown RBP3.37□□□□□ -1.87
CD44-223ENST00000526553 KLF2Q9Y5W3 355 aaPredicted RBP3.37□□□□□ -1.87
CD44-223ENST00000526553 SPACA6W5XKT8 324 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 ADCY10Q96PN6 1610 aa3.37□□□□□ -1.87
CD44-223ENST00000526553 ABCA10Q8WWZ4 1543 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 A0A1W2PNV4 684 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 MFSD2BA6NFX1 497 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 K7ERI5 159 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 SAP18O00422 153 aaKnown RBP3.36□□□□□ -1.87
CD44-223ENST00000526553 CXCL11O14625 94 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 NUDT21O43809 227 aaKnown RBP3.36□□□□□ -1.87
CD44-223ENST00000526553 TYROBPO43914 113 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 SNX4O95219 450 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 OPN1LWP04000 364 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 CA8P35219 290 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 HMGCLP35914 325 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 RGS4P49798 205 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 ZNF85Q03923 595 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 FILIP1LQ4L180 1135 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 ACER2Q5QJU3 275 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 FAM219BQ5XKK7 198 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 ZNF683Q8IZ20 524 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 SYT14Q8NB59 555 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 OR4F17Q8NGA8 305 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 CRYGNQ8WXF5 182 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 TADA1Q96BN2 335 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 OR4F4Q96R69 305 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 TRIM9Q9C026 710 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 ESM1Q9NQ30 184 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 IMPAD1Q9NX62 359 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 VNN3Q9NY84 501 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 RAI14Q9P0K7 980 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 CHRNA9Q9UGM1 479 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 CYTH4Q9UIA0 394 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 WDR45Q9Y484 360 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 CUL7Q14999 1698 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 FHAD1B1AJZ9 1412 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 NUP160Q12769 1436 aa3.36□□□□□ -1.87
CD44-223ENST00000526553 MAPKBP1O60336 1514 aa3.35□□□□□ -1.87
CD44-223ENST00000526553 KLF18A0A0U1RQI7 1052 aa3.35□□□□□ -1.87
CD44-223ENST00000526553 C11orf98E9PRG8 122 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms