RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	MFSD2B	A6NFX1	497 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	NCF1B	A6NI72	391 aa	Predicted RBP	4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	NCF1C	A8MVU1	366 aa	Predicted RBP	4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	CASC3	O15234	703 aa	Known RBP	4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	POLR3G	O15318	223 aa	Predicted RBP	4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	EPO	P01588	193 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	EPB41	P11171	864 aa	Known RBP	4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	CYP2F1	P24903	491 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	CNN1	P51911	297 aa	Known RBP	4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	MTTP	P55157	894 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	PLD1	Q13393	1074 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	RFTN1	Q14699	578 aa	Predicted RBP	4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	P2RY14	Q15391	338 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	STXBP2	Q15833	593 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	SLC36A3	Q495N2	470 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	LCE3A	Q5TA76	89 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	C1orf189	Q5VU69	101 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	AADACL4	Q5VUY2	407 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	SULT1C3	Q6IMI6	304 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	LRRC70	Q7Z2Q7	622 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	ITIH5	Q86UX2	942 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	SLC22A9	Q8IVM8	553 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	PARP8	Q8N3A8	854 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	RNF148	Q8N7C7	305 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	LEMD2	Q8NC56	503 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	FAM71C	Q8NEG0	241 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	OR52B4	Q8NGK2	314 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	OR10T2	Q8NGX3	314 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	FBXO32	Q969P5	355 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	PSKH2	Q96QS6	385 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	TTYH2	Q9BSA4	534 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	NAPB	Q9H115	298 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	EHD1	Q9H4M9	534 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	GDF3	Q9NR23	364 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	TECR	Q9NZ01	308 aa	Known RBP	4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	CNOT2	Q9NZN8	540 aa	Known RBP	4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	IKZF3	Q9UKT9	509 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	FOXA2	Q9Y261	457 aa	Predicted RBP	4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	MFHAS1	Q9Y4C4	1052 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	ALK	Q9UM73	1620 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	NRXN3	Q9Y4C0	1643 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	LRRC7	Q96NW7	1537 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	IFT172	Q9UG01	1749 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	NPC1L1	Q9UHC9	1359 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	SH3PXD2B	A1X283	911 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	FAM47DP	A6NHR8	397 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	RNF113A	O15541	343 aa	Known RBP	4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	FGF4	P08620	206 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	MMP10	P09238	476 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	NUDT17	P0C025	328 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	CALCB	P10092	127 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	CPA3	P15088	417 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	UGT1A6	P19224	532 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	ZBTB25	P24278	435 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	KRTAP5-9	P26371	169 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	AKT2	P31751	481 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	MDH2	P40926	338 aa	Known RBP	4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	TNFRSF4	P43489	277 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	FNTA	P49354	379 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	PPP1R8	Q12972	351 aa	Known RBP	4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	HEPACAM	Q14CZ8	416 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	STK11	Q15831	433 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	PPP1R3A	Q16821	1122 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	HADH	Q16836	314 aa	Known RBP	4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	GSG1	Q2KHT4	349 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	C1orf185	Q5T7R7	199 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	ZDHHC21	Q8IVQ6	265 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	LAX1	Q8IWV1	398 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	PRR22	Q8IZ63	422 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	TTC5	Q8N0Z6	440 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	ZNF525	Q8N782	197 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	FADS6	Q8N9I5	356 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	RAPGEF5	Q92565	580 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	RAB3C	Q96E17	227 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	SPAG8	Q99932	426 aa	Predicted RBP	4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	GPR61	Q9BZJ8	451 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	ZDHHC6	Q9H6R6	413 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	SLC25A19	Q9HC21	320 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	RPRD1B	Q9NQG5	326 aa	Known RBP	4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	FAM114A2	Q9NRY5	505 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	RAB20	Q9NX57	234 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	SEC14L4	Q9UDX3	406 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	MLX	Q9UH92	298 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	ENTPD4	Q9Y227	616 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	NOSIP	Q9Y314	301 aa	Known RBP	4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	SETBP1	Q9Y6X0	1596 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	PTCH1	Q13635	1447 aa		4.04	□□□□□ -1.76
SF3B1-212	ENST00000496458	MSH6	P52701	1360 aa		4.03	□□□□□ -1.76
SF3B1-212	ENST00000496458	PLEKHG2	Q9H7P9	1386 aa		4.03	□□□□□ -1.76
SF3B1-212	ENST00000496458	DIP2A	Q14689	1571 aa		4.03	□□□□□ -1.76
SF3B1-212	ENST00000496458	MAPK13	O15264	365 aa		4.03	□□□□□ -1.76
SF3B1-212	ENST00000496458	LANCL1	O43813	399 aa		4.03	□□□□□ -1.76
SF3B1-212	ENST00000496458	E2F6	O75461	281 aa		4.03	□□□□□ -1.76
SF3B1-212	ENST00000496458	CPNE6	O95741	557 aa		4.03	□□□□□ -1.76
SF3B1-212	ENST00000496458	CLU	P10909	449 aa		4.03	□□□□□ -1.76
SF3B1-212	ENST00000496458	CCDC130	P13994	396 aa		4.03	□□□□□ -1.76
SF3B1-212	ENST00000496458	ZNF18	P17022	549 aa		4.03	□□□□□ -1.76
SF3B1-212	ENST00000496458	DRD5	P21918	477 aa		4.03	□□□□□ -1.76
SF3B1-212	ENST00000496458	CALB2	P22676	271 aa		4.03	□□□□□ -1.76
SF3B1-212	ENST00000496458	GDF1	P27539	372 aa		4.03	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms