RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 NPIPB9F8W1W9 429 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 ALOX12BO75342 701 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 NPIPA8P0DM63 369 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 CD82P27701 267 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 STAT5AP42229 794 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 ZNF136P52737 540 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 EMP2P54851 167 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 CD47Q08722 323 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 FLYWCH1Q4VC44 716 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 MRPL2Q5T653 305 aaKnown RBP13.1□□□□□ -0.31
CUX1-209ENST00000487284 APLFQ8IW19 511 aaPredicted RBP13.1□□□□□ -0.31
CUX1-209ENST00000487284 LINC00471Q8N535 108 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 ZSCAN1Q8NBB4 408 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 OR4N2Q8NGD1 307 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 SLC2A12Q8TD20 617 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 ZNF721Q8TF20 911 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 HDAC2Q92769 488 aaKnown RBP13.1□□□□□ -0.31
CUX1-209ENST00000487284 ART5Q96L15 291 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 SCNM1Q9BWG6 230 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 WASF3Q9UPY6 502 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 CFL2Q9Y281 166 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 GMPPBQ9Y5P6 360 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 CLCA3PQ9Y6N3 262 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 HEATR5AQ86XA9 2040 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 A8MUA0 341 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 AP3D1O14617 1153 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 CLPTM1O96005 669 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 GASTP01350 101 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 TFAP2AP05549 437 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 UMODP07911 640 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 RAB40ALP0C0E4 278 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 ELK4P28324 431 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 PPICP45877 212 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 NUP107P57740 925 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 TAS2R41P59536 307 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 RPS18P62269 152 aaKnown RBP13.09□□□□□ -0.31
CUX1-209ENST00000487284 TUBA4AP68366 448 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 DNASE1L3Q13609 305 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 ZNF141Q15928 474 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 CTU2Q2VPK5 515 aaKnown RBP13.09□□□□□ -0.31
CUX1-209ENST00000487284 RBM48Q5RL73 367 aaKnown RBP13.09□□□□□ -0.31
CUX1-209ENST00000487284 PODNL1Q6PEZ8 512 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 DTX1Q86Y01 620 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 ZNF321PQ8N8H1 164 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 MORN4Q8NDC4 146 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 OR2Y1Q8NGV0 311 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 DAZLQ92904 295 aaKnown RBP13.09□□□□□ -0.31
CUX1-209ENST00000487284 NKD1Q969G9 470 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 NXPE2Q96DL1 559 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 MCHR1Q99705 422 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 APOL4Q9BPW4 351 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 G6PC3Q9BUM1 346 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 DGCR6LQ9BY27 220 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 POLR2J2Q9GZM3 115 aaKnown RBP13.09□□□□□ -0.31
CUX1-209ENST00000487284 OR8D2Q9GZM6 311 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 POLR2J3Q9H1A7 115 aaKnown RBP13.09□□□□□ -0.31
CUX1-209ENST00000487284 CBLCQ9ULV8 474 aa13.09□□□□□ -0.31
CUX1-209ENST00000487284 CELSR3Q9NYQ7 3312 aa13.08□□□□□ -0.31
CUX1-209ENST00000487284 LOC101059948A0A1B0GTJ6 334 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 TERTO14746 1132 aaKnown RBP13.08□□□□□ -0.32
CUX1-209ENST00000487284 CYP7B1O75881 506 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 OR5F1O95221 314 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 F8A1P23610 371 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 IFNA8P32881 189 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 DLSTP36957 453 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 ID4P47928 161 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 UGT2B15P54855 530 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 PSMD4P55036 377 aaKnown RBP13.08□□□□□ -0.32
CUX1-209ENST00000487284 RPP38P78345 283 aaKnown RBP13.08□□□□□ -0.32
CUX1-209ENST00000487284 PLAURQ03405 335 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 ST3GAL3Q11203 375 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 TRAM2Q15035 370 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 TGIF1Q15583 401 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.08□□□□□ -0.32
CUX1-209ENST00000487284 ZSWIM7Q19AV6 140 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 ENTPD8Q5MY95 495 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 LAIR2Q6ISS4 152 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 PGBD2Q6P3X8 592 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 KLHL17Q6TDP4 642 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 PLEKHM3Q6ZWE6 761 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 ANKRD37Q7Z713 158 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 RANBP3LQ86VV4 465 aaPredicted RBP13.08□□□□□ -0.32
CUX1-209ENST00000487284 GRAMD2AQ8IUY3 354 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 BCORP1Q8N888 145 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 OR4K5Q8NGD3 323 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 ADAMTS16Q8TE57 1224 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 METTL21AQ8WXB1 218 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 GTPBP3Q969Y2 492 aaKnown RBP13.08□□□□□ -0.32
CUX1-209ENST00000487284 NUDT9Q9BW91 350 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 PRR14Q9BWN1 585 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 ARMC7Q9H6L4 198 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 CTPS2Q9NRF8 586 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 TUBA8Q9NY65 449 aaPredicted RBP13.08□□□□□ -0.32
CUX1-209ENST00000487284 TCFL5Q9UL49 500 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 FARSAQ9Y285 508 aaKnown RBP13.08□□□□□ -0.32
CUX1-209ENST00000487284 OR10H1Q9Y4A9 318 aa13.08□□□□□ -0.32
CUX1-209ENST00000487284 IGHV3-20A0A0C4DH32 117 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 CPSF4LA6NMK7 179 aaKnown RBP13.07□□□□□ -0.32
CUX1-209ENST00000487284 OR10H3O60404 316 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 FMO6PO60774 539 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms