RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 MGAT4AQ9UM21 535 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 RABL2BQ9UNT1 228 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 AP1M2Q9Y6Q5 423 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 PSMD9O00233 223 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 PDCD5O14737 125 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 C1QAP02745 245 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 PIGAP37287 484 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 GPR143P51810 404 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 SLX4IPQ5VYV7 408 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 METRNLQ641Q3 311 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 SLC46A3Q7Z3Q1 461 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 PPP1R3BQ86XI6 285 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 TMEM151BQ8IW70 566 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 ZFP41Q8N8Y5 198 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 LSM14AQ8ND56 463 aaKnown RBP10.34□□□□□ -0.75
HDAC6-228ENST00000486227 OR9A4Q8NGU2 314 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 ACOT12Q8WYK0 555 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 ZNF419Q96HQ0 510 aaPredicted RBP10.34□□□□□ -0.75
HDAC6-228ENST00000486227 ACTR6Q9GZN1 396 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 ACSS1Q9NUB1 689 aaPredicted RBP10.34□□□□□ -0.75
HDAC6-228ENST00000486227 SLC39A1Q9NY26 324 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 MMP17Q9ULZ9 603 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 KLK4Q9Y5K2 254 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 TRIP11Q15643 1979 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 TEX51A0A1B0GUA7 166 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 PPM1BO75688 479 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 IFNA6P05013 189 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 ISL1P61371 349 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 FGFBP1Q14512 234 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 FAM69BQ5VUD6 431 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 TMEM225Q6GV28 225 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 SHFQ7M4L6 423 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 LNX2Q8N448 690 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 PSD4Q8NDX1 1056 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 PJA1Q8NG27 643 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 TANKQ92844 425 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 PDXPQ96GD0 296 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 C1QTNF3Q9BXJ4 246 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 SRA1Q9HD15 236 aaKnown RBP10.34□□□□□ -0.75
HDAC6-228ENST00000486227 INIPQ9NRY2 104 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 UPB1Q9UBR1 384 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 OR51B4Q9Y5P0 310 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 KCNK5O95279 499 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 ZNF806P0C7X5 589 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 GKN3PP0CG01 181 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 XCR1P46094 333 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 NTRK2Q16620 822 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 FAM219BQ5XKK7 198 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 TECPR1Q7Z6L1 1165 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 SYNPOQ8N3V7 929 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 SAMD12Q8N8I0 201 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 C1orf216Q8TAB5 229 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 OR1E3Q8WZA6 343 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 DIO2Q92813 273 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 TREX2Q9BQ50 279 aaPredicted RBP10.34□□□□□ -0.75
HDAC6-228ENST00000486227 TMEM121BQ9BXQ6 578 aaPredicted RBP10.34□□□□□ -0.75
HDAC6-228ENST00000486227 ASB4Q9Y574 426 aa10.34□□□□□ -0.75
HDAC6-228ENST00000486227 POM121BA6NF01 834 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 A6NL46 340 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 LRRN3E7EW58 273 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 H0Y8X5 98 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 J3KTA2 159 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 PCDH17O14917 1159 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 CDC40O60508 579 aaKnown RBP eCLIP10.33□□□□□ -0.75
HDAC6-228ENST00000486227 PRAMEF2O60811 474 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 PRKRAO75569 313 aaKnown RBP10.33□□□□□ -0.75
HDAC6-228ENST00000486227 B3GALT4O96024 378 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 ADORA3P0DMS8 318 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 PRKACAP17612 351 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 CFL1P23528 166 aaKnown RBP10.33□□□□□ -0.75
HDAC6-228ENST00000486227 CD27P26842 260 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 PYCR1P32322 319 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 SLC6A9P48067 706 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 GDI2P50395 445 aaKnown RBP10.33□□□□□ -0.75
HDAC6-228ENST00000486227 CSNK1G2P78368 415 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 SELENBP1Q13228 472 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 OR6N2Q8NGY6 317 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 ADAMTS19Q8TE59 1207 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 C15orf40Q8WUR7 153 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 CHTF18Q8WVB6 975 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 GATAD2BQ8WXI9 593 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 LRRN3Q9H3W5 708 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 CXorf36Q9H7Y0 433 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 NANSQ9NR45 359 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 FKBP7Q9Y680 259 aa10.33□□□□□ -0.75
HDAC6-228ENST00000486227 FXYD6-FXYD2A0A087WZ82 144 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 KLK8O60259 260 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 UGT2B7P16662 529 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 MTNR1AP48039 350 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 SLC6A12P48065 614 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 ERV3-1Q14264 604 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 C18orf63Q68DL7 685 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 DLEU7Q6UYE1 221 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 IQCF2Q8IXL9 164 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 SPERTQ8NA61 448 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 B3GNT7Q8NFL0 401 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 DYNC2LI1Q8TCX1 351 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 GGHQ92820 318 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 SAMD8Q96LT4 415 aa10.33□□□□□ -0.76
HDAC6-228ENST00000486227 MNTQ99583 582 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms