RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 FPR1P21462 350 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 RFX3P48380 749 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CD226Q15762 336 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 FIGNL1Q6PIW4 674 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 C20orf204Q6ZNR8 217 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 GALNT10Q86SR1 603 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 WDR75Q8IWA0 830 aaKnown RBP10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 HOMEZQ8IX15 550 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CIARTQ8N365 385 aaPredicted RBP10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 BANPQ8N9N5 519 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ZFP28Q8NHY6 868 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 EPS8L3Q8TE67 593 aaKnown RBP10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SLC9A6Q92581 669 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PPCDCQ96CD2 204 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 FAM120BQ96EK7 910 aaKnown RBP10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PIK3IP1Q96FE7 263 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 COX4I2Q96KJ9 171 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 TMEM204Q9BSN7 226 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 DUSP22Q9NRW4 184 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 GLRX2Q9NS18 164 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 MED17Q9NVC6 651 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SH3BP4Q9P0V3 963 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 STOML1Q9UBI4 398 aa10.96□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 NPIPB9F8W1W9 429 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 EIF1AYO14602 144 aaKnown RBP10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 NPHS1O60500 1241 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SMPD2O60906 423 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 HSPA4LO95757 839 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CHRNGP07510 517 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PPP3CBP16298 524 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ARRB2P32121 409 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ASMTP46597 345 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 EIF1AXP47813 144 aaKnown RBP10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SERPINB4P48594 390 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PRKAG1P54619 331 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SGCBQ16585 318 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 KLHL26Q53HC5 615 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 XKR7Q5GH72 579 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 Q5PR19 223 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ANKRD34AQ69YU3 496 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 LRIG3Q6UXM1 1119 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ESPNLQ6ZVH7 1005 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TRABD2AQ86V40 505 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 MISPQ8IVT2 679 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 C4orf33Q8N1A6 199 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 OR2V1Q8NHB1 315 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CLHC1Q8NHS4 586 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZNF524Q96C55 264 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 RNF145Q96MT1 663 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 STACQ99469 402 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 BTBD2Q9BX70 525 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GSX2Q9BZM3 304 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 IQCGQ9H095 443 aaKnown RBP10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 OR10A4Q9H209 315 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PIGUQ9H490 435 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TRAF6Q9Y4K3 522 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ACTL7BQ9Y614 415 aa10.95□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TMEM233B4DJY2 109 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ETV2O00321 342 aaPredicted RBP10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CXCL13O43927 109 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GMFGO60234 142 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 NTN1O95631 604 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 LY6G6DO95868 133 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 HMGN2P05204 90 aaKnown RBP10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 HEXAP06865 529 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ALOX5P09917 674 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 LAMP1P11279 417 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PSMB1P20618 241 aaKnown RBP10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ADH6P28332 368 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SHC1P29353 583 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ALDH3A1P30838 453 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GPC1P35052 558 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 RPL38P63173 70 aaKnown RBP10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ARL13AQ5H913 290 aaPredicted RBP10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CCNJQ5T5M9 372 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CLEC9AQ6UXN8 241 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 Q71RC1 249 aaPredicted RBP10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 R3HCC1LQ7Z5L2 792 aaKnown RBP10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 MTERF4Q7Z6M4 381 aaKnown RBP10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 RIMKLAQ8IXN7 391 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GATSQ8NAP1 163 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 OR7A2PQ8NGA2 310 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TWIST2Q8WVJ9 160 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 UBLCP1Q8WVY7 318 aaPredicted RBP10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 OSTF1Q92882 214 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 COQ8BQ96D53 544 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 C3orf30Q96M34 536 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 KLHL4Q9C0H6 718 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZNF701Q9NV72 531 aaPredicted RBP10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GPATCH2Q9NW75 528 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 MID2Q9UJV3 735 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ICAM5Q9UMF0 924 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CLEC4AQ9UMR7 237 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 EMC9Q9Y3B6 208 aa10.94□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TNFSF11O14788 317 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PIP5K1BO14986 540 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SCAMP2O15127 329 aaKnown RBP10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 OIP5O43482 229 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 DNAJA2O60884 412 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms