RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 OTUB1Q96FW1 271 aaPredicted RBP17.72■□□□□ 0.43
COL9A3-210ENST00000472880 CHMP6Q96FZ7 201 aa17.72■□□□□ 0.43
COL9A3-210ENST00000472880 SH3YL1Q96HL8 342 aaPredicted RBP17.72■□□□□ 0.43
COL9A3-210ENST00000472880 RNF145Q96MT1 663 aa17.72■□□□□ 0.43
COL9A3-210ENST00000472880 SMR3AQ99954 134 aa17.72■□□□□ 0.43
COL9A3-210ENST00000472880 ZNF395Q9H8N7 513 aaPredicted RBP17.72■□□□□ 0.43
COL9A3-210ENST00000472880 UBQLN4Q9NRR5 601 aa17.72■□□□□ 0.43
COL9A3-210ENST00000472880 MED17Q9NVC6 651 aa17.72■□□□□ 0.43
COL9A3-210ENST00000472880 CLEC4AQ9UMR7 237 aa17.72■□□□□ 0.43
COL9A3-210ENST00000472880 PCNX3Q9H6A9 2034 aa17.72■□□□□ 0.43
COL9A3-210ENST00000472880 SS18L1O75177 396 aaPredicted RBP17.71■□□□□ 0.43
COL9A3-210ENST00000472880 EFNA1P20827 205 aaPredicted RBP17.71■□□□□ 0.43
COL9A3-210ENST00000472880 MAPK1P28482 360 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 RAC1P63000 192 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 POU6F2P78424 691 aaPredicted RBP17.71■□□□□ 0.43
COL9A3-210ENST00000472880 LTBQ06643 244 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 ANKRD34AQ69YU3 496 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 LRIG3Q6UXM1 1119 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 C20orf204Q6ZNR8 217 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 OR2V1Q8NHB1 315 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 ACTRT2Q8TDY3 377 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 C16orf58Q96GQ5 468 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 APOPT1Q96IL0 206 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 ADGRG7Q96K78 797 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 HS3ST6Q96QI5 342 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 TMEM185BQ9H7F4 350 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 FANCFQ9NPI8 374 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 ZCCHC3Q9NUD5 404 aaKnown RBP17.71■□□□□ 0.43
COL9A3-210ENST00000472880 MKS1Q9NXB0 559 aa17.71■□□□□ 0.43
COL9A3-210ENST00000472880 A0A1W2PQD3 144 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 TMEM114B3SHH9 223 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 TMEM233B4DJY2 109 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 TNFSF11O14788 317 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 PIP5K1BO14986 540 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 SCAMP2O15127 329 aaKnown RBP17.7■□□□□ 0.42
COL9A3-210ENST00000472880 CXCL13O43927 109 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 HSPA4LO95757 839 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 OPN1LWP04000 364 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 CHRNGP07510 517 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 BCKDHAP12694 445 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 PPP3CBP16298 524 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 RPL3P39023 403 aaKnown RBP17.7■□□□□ 0.42
COL9A3-210ENST00000472880 MLC1Q15049 377 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 CTU2Q2VPK5 515 aaKnown RBP17.7■□□□□ 0.42
COL9A3-210ENST00000472880 PDSS1Q5T2R2 415 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 CCNJQ5T5M9 372 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 CPTPQ5TA50 214 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 CLEC9AQ6UXN8 241 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 ESPNLQ6ZVH7 1005 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 Q71RC1 249 aaPredicted RBP17.7■□□□□ 0.42
COL9A3-210ENST00000472880 B4GALNT2Q8NHY0 566 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 FAM120BQ96EK7 910 aaKnown RBP17.7■□□□□ 0.42
COL9A3-210ENST00000472880 MARK4Q96L34 752 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 NPAS1Q99742 590 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 BTBD2Q9BX70 525 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 EML4Q9HC35 981 aaKnown RBP17.7■□□□□ 0.42
COL9A3-210ENST00000472880 PLSCR4Q9NRQ2 329 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 GLRX2Q9NS18 164 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 FBXO34Q9NWN3 711 aa17.7■□□□□ 0.42
COL9A3-210ENST00000472880 FAM171A2A8MVW0 826 aa17.69■□□□□ 0.42
COL9A3-210ENST00000472880 NPHS1O60500 1241 aa17.69■□□□□ 0.42
COL9A3-210ENST00000472880 HMGN2P05204 90 aaKnown RBP17.69■□□□□ 0.42
COL9A3-210ENST00000472880 PSMA4P25789 261 aaKnown RBP17.69■□□□□ 0.42
COL9A3-210ENST00000472880 LASP1Q14847 261 aaKnown RBP17.69■□□□□ 0.42
COL9A3-210ENST00000472880 HBMQ6B0K9 141 aa17.69■□□□□ 0.42
COL9A3-210ENST00000472880 WDR93Q6P2C0 686 aa17.69■□□□□ 0.42
COL9A3-210ENST00000472880 STK32CQ86UX6 486 aa17.69■□□□□ 0.42
COL9A3-210ENST00000472880 AGR3Q8TD06 166 aa17.69■□□□□ 0.42
COL9A3-210ENST00000472880 PPP3R2Q96LZ3 170 aa17.69■□□□□ 0.42
COL9A3-210ENST00000472880 STACQ99469 402 aa17.69■□□□□ 0.42
COL9A3-210ENST00000472880 DUSP22Q9NRW4 184 aa17.69■□□□□ 0.42
COL9A3-210ENST00000472880 SIRT3Q9NTG7 399 aaPredicted RBP17.69■□□□□ 0.42
COL9A3-210ENST00000472880 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.69■□□□□ 0.42
COL9A3-210ENST00000472880 ATP6V1HQ9UI12 483 aa17.69■□□□□ 0.42
COL9A3-210ENST00000472880 TRAF6Q9Y4K3 522 aa17.69■□□□□ 0.42
COL9A3-210ENST00000472880 SNX8Q9Y5X2 465 aa17.69■□□□□ 0.42
COL9A3-210ENST00000472880 V9GYY5 206 aaPredicted RBP17.69■□□□□ 0.42
COL9A3-210ENST00000472880 TLDC2A0PJX2 215 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 ADAMDEC1O15204 470 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 FGF4P08620 206 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 ATP6V1C1P21283 382 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 ALDH3A1P30838 453 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 CD226Q15762 336 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 ARL13AQ5H913 290 aaPredicted RBP17.68■□□□□ 0.42
COL9A3-210ENST00000472880 BEX5Q5H9J7 111 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 EXOSC6Q5RKV6 272 aaKnown RBP17.68■□□□□ 0.42
COL9A3-210ENST00000472880 BEND4Q6ZU67 534 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 ZNF527Q8NB42 609 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 OR7A2PQ8NGA2 310 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 AENQ8WTP8 325 aaKnown RBP17.68■□□□□ 0.42
COL9A3-210ENST00000472880 CDS1Q92903 461 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 PERPQ96FX8 193 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 KLHL15Q96M94 604 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 PIGUQ9H490 435 aa17.68■□□□□ 0.42
COL9A3-210ENST00000472880 NIPBLQ6KC79 2804 aaeCLIP17.68■□□□□ 0.42
COL9A3-210ENST00000472880 A0A0J9YW62 118 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.67■□□□□ 0.42
COL9A3-210ENST00000472880 NUDT14O95848 222 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 TUBBP07437 444 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 IL11P20809 199 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms