RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 NPC1O15118 1278 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SMIM17P0DL12 118 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ALDH3B2P48448 385 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 NKX3-2P78367 333 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ADARB1P78563 741 aaKnown RBP12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TUBA3CQ13748 450 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SLC5A8Q8N695 610 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 NIPA2Q8N8Q9 360 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ST7LQ8TDW4 575 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZNF689Q96CS4 500 aaPredicted RBP12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ARHGAP39Q9C0H5 1083 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FAIMQ9NVQ4 179 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TRAV18A0A075B6X5 111 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CD34P28906 385 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZBED5Q49AG3 693 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MANEAQ5SRI9 462 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ADOQ96SZ5 270 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PHOX2BQ99453 314 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 IL23AQ9NPF7 189 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TEX264Q9Y6I9 313 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 A0A0U1RQS6 177 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CEBPZOSA8MTT3 80 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 UCHL1P09936 223 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 HTR2AP28223 471 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RPS18P62269 152 aaKnown RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZNF783Q6ZMS7 281 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TMEFF1Q8IYR6 380 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OR2T4Q8NH00 348 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 DPCDQ9BVM2 203 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 COQ3Q9NZJ6 369 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ANKMY1Q9P2S6 941 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 WASH4PA8MWX3 477 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 K7EPK0 472 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 APBB3O95704 486 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MTHFD2P13995 350 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RAB6AP20340 208 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CD1BP29016 333 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 NR0B2Q15466 257 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 LINC00696Q6ZRV3 163 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZNF551Q7Z340 670 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FAM71E2Q8N5Q1 922 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 GOT1L1Q8NHS2 421 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 DCUN1D4Q92564 292 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MAELQ96JY0 434 aaKnown RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 HRASLSQ9HDD0 168 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 KDM4EB2RXH2 506 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ADAMTS4O75173 837 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SNAP29O95721 258 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 DCNP07585 359 aaKnown RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SERPINA2P20848 420 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ACTC1P68032 377 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ACTA1P68133 377 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 C19orf35Q6ZS72 473 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZMYND19Q96E35 227 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 NELL2Q99435 816 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 LINC00597Q9H2U6 94 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FOLH1BQ9HBA9 442 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 DUSP13Q9UII6 198 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 LRRC42Q9Y546 428 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 NSG1A0A0A6YYJ2 146 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TIMM8AO60220 97 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PRAMEF2O60811 474 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CXCL12P48061 93 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CLCN2P51788 898 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 GPX6P59796 221 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TLE4Q04727 773 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 DOC2AQ14183 400 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 NXPE4Q6UWF7 544 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ABHD12BQ7Z5M8 362 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MINDY1Q8N5J2 469 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ACBD7Q8N6N7 88 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 KDM1BQ8NB78 822 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TOE1Q96GM8 510 aaKnown RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 LIPT1Q9Y234 373 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZNF705GA8MUZ8 300 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ARSAP15289 507 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 DNASE1P24855 282 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 AGTR1P30556 359 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 THBS3P49746 956 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TUBA1BP68363 451 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TUBA4AP68366 448 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OR8B8Q15620 311 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 UGT3A2Q3SY77 523 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ARHGAP11AQ6P4F7 1023 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TUBA1AQ71U36 451 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 C2CD4AQ8NCU7 369 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PECRQ9BY49 303 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 DPH1Q9BZG8 443 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SMIM3Q9BZL3 60 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 C8orf33Q9H7E9 229 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SEC14L4Q9UDX3 406 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FOXD2O60548 495 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SPDEFO95238 335 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RAB5CP51148 216 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SNRPD2P62316 118 aaKnown RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PDE7AQ13946 482 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 KCNJ11Q14654 390 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 C18orf21Q32NC0 220 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TECPR1Q7Z6L1 1165 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms