RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 C16orf97H3BN30 126 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 SCDO00767 359 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 SIAH2O43255 324 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 PEX11AO75192 247 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 SPAG7O75391 227 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 HMGN2P05204 90 aaKnown RBP14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 HOXC12P31275 282 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 SERPINB5P36952 375 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 EIF1AXP47813 144 aaKnown RBP14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 KCNJ5P48544 419 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 RAC1P63000 192 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 PLPPR5Q32ZL2 321 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 CPTPQ5TA50 214 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 ZCCHC23Q6ZST2 131 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 OR10D3Q8NH80 312 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 AGR3Q8TD06 166 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 TCP10LQ8TDR4 215 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 JADE3Q92613 823 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 OTUB1Q96FW1 271 aaPredicted RBP14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 ADGRG7Q96K78 797 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 NPAS1Q99742 590 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 PRRG4Q9BZD6 226 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 PIGUQ9H490 435 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 MED17Q9NVC6 651 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 GIN1Q9NXP7 522 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 GIMAP2Q9UG22 337 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 EMC9Q9Y3B6 208 aa14.87□□□□□ -0.03
CCDC28B-204ENST00000469003 FLNAP21333 2647 aaKnown RBP14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 ADAMDEC1O15204 470 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 LYPLA1O75608 230 aaPredicted RBP14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 LAMP1P11279 417 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 PSMA4P25789 261 aaKnown RBP14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 SLC6A8P48029 635 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 ZNF41P51814 821 aaPredicted RBP14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 IFFO1Q0D2I5 559 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 LASP1Q14847 261 aaKnown RBP14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 CTU2Q2VPK5 515 aaKnown RBP14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 ATP6AP1LQ52LC2 224 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 CCNJQ5T5M9 372 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 PPP4R4Q6NUP7 873 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 CDC73Q6P1J9 531 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 NATD1Q8N6N6 113 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 WFDC11Q8NEX6 87 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 OR6K3Q8NGY3 331 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 B4GALNT2Q8NHY0 566 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 PSMA8Q8TAA3 256 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 OR5P2Q8WZ92 322 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 CDS1Q92903 461 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 CHMP6Q96FZ7 201 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 SH3YL1Q96HL8 342 aaPredicted RBP14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 GMPPAQ96IJ6 420 aaPredicted RBP14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 C3orf30Q96M34 536 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 RNF145Q96MT1 663 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 ROPN1BQ9BZX4 212 aaPredicted RBP14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 ROPN1Q9HAT0 212 aaPredicted RBP14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 PLSCR4Q9NRQ2 329 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 ATAD3AQ9NVI7 634 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 MCTS1Q9ULC4 181 aaKnown RBP14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 SNX8Q9Y5X2 465 aa14.86□□□□□ -0.03
CCDC28B-204ENST00000469003 SS18L1O75177 396 aaPredicted RBP14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 SLU7O95391 586 aaKnown RBP14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 IL11P20809 199 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 ARRB2P32121 409 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 VSNL1P62760 191 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 PTGR1Q14914 329 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 CD226Q15762 336 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 C6orf136Q5SQH8 315 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 PDSS1Q5T2R2 415 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 ESPNLQ6ZVH7 1005 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 ZNF550Q7Z398 422 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 CXorf67Q86X51 503 aaPredicted RBP14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 OR56A1Q8NGH5 318 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 OR2V1Q8NHB1 315 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 POC1BQ8TC44 478 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 CAVIN3Q969G5 261 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 PIK3IP1Q96FE7 263 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 MARK4Q96L34 752 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 C1orf50Q9BV19 199 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 ACTRT3Q9BYD9 372 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 GLRX2Q9NS18 164 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 ZDHHC2Q9UIJ5 367 aa14.85□□□□□ -0.03
CCDC28B-204ENST00000469003 UQCRHLA0A096LP55 91 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 A0A0J9YW62 118 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 TNFSF11O14788 317 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 CXCL13O43927 109 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 SOX30O94993 753 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 SYNGR4O95473 234 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 PLGP00747 810 aaPredicted RBP14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 OPN1LWP04000 364 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 KRT16P08779 473 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 ATP6V1C1P21283 382 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 ME2P23368 584 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 CCT3P49368 545 aaKnown RBP14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 CTBP2P56545 445 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 NKX6-1P78426 367 aaPredicted RBP14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 LSM12Q3MHD2 195 aaKnown RBP14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 IL23RQ5VWK5 629 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 SHEQ5VZ18 495 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 MTERF4Q7Z6M4 381 aaKnown RBP14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 KRTAP1-3Q8IUG1 177 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms