RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 NPIPA8P0DM63 369 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 LBPP18428 481 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 CPOXP36551 454 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 ZNF41P51814 821 aaPredicted RBP9.17□□□□□ -0.94
SF3A3-204ENST00000462258 SUCLG1P53597 346 aaKnown RBP9.17□□□□□ -0.94
SF3A3-204ENST00000462258 CLDN15P56746 228 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 CLDN20P56880 219 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 RPS3AP61247 264 aaKnown RBP9.17□□□□□ -0.94
SF3A3-204ENST00000462258 RPS26P62854 115 aaKnown RBP9.17□□□□□ -0.94
SF3A3-204ENST00000462258 TMEM44Q2T9K0 475 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 PLPPR5Q32ZL2 321 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 OR2A2Q6IF42 318 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 BHLHB9Q6PI77 547 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 GGNQ86UU5 652 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 KIF18BQ86Y91 864 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 GTPBP8Q8N3Z3 284 aaPredicted RBP9.17□□□□□ -0.94
SF3A3-204ENST00000462258 METTL25Q8N6Q8 603 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 ZNF614Q8N883 585 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 ZNF527Q8NB42 609 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 OR8J2Q8NGG1 315 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 OR5D16Q8NGK9 328 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 OR4A15Q8NGL6 344 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 FIG4Q92562 907 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 ZBTB8AQ96BR9 441 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 ZNF845Q96IR2 970 aaPredicted RBP9.17□□□□□ -0.94
SF3A3-204ENST00000462258 OR7D2Q96RA2 312 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 GPATCH1Q9BRR8 931 aaKnown RBP9.17□□□□□ -0.94
SF3A3-204ENST00000462258 RBM24Q9BX46 236 aaKnown RBP9.17□□□□□ -0.94
SF3A3-204ENST00000462258 PINK1Q9BXM7 581 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 PIGMQ9H3S5 423 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 SERHL2Q9H4I8 314 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 MEAF6Q9HAF1 191 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 MED17Q9NVC6 651 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 PNPOQ9NVS9 261 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 GALNT8Q9NY28 637 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 ITGB1BP2Q9UKP3 347 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 ZNF175Q9Y473 711 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 AP4B1Q9Y6B7 739 aa9.17□□□□□ -0.94
SF3A3-204ENST00000462258 C7orf72A4D263 438 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 TUBAL3A6NHL2 446 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 E9PBE3 544 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 SDHDO14521 159 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 EIF1AYO14602 144 aaKnown RBP9.16□□□□□ -0.94
SF3A3-204ENST00000462258 CRHP06850 196 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 ALDOCP09972 364 aaKnown RBP9.16□□□□□ -0.94
SF3A3-204ENST00000462258 FCGR2AP12318 317 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 RNF144AP50876 292 aaPredicted RBP9.16□□□□□ -0.94
SF3A3-204ENST00000462258 CLNS1AP54105 237 aaKnown RBP9.16□□□□□ -0.94
SF3A3-204ENST00000462258 WDR4P57081 412 aaKnown RBP9.16□□□□□ -0.94
SF3A3-204ENST00000462258 MAGOHP61326 146 aaKnown RBP9.16□□□□□ -0.94
SF3A3-204ENST00000462258 EEF1A1P68104 462 aaKnown RBP9.16□□□□□ -0.94
SF3A3-204ENST00000462258 ZNF117Q03924 483 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 PON3Q15166 354 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 DPY19L1Q2PZI1 675 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 SPANXN4Q5MJ08 99 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 BEND6Q5SZJ8 279 aaPredicted RBP9.16□□□□□ -0.94
SF3A3-204ENST00000462258 EEF1A1P5Q5VTE0 462 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 OGFOD2Q6N063 350 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 PPP4R4Q6NUP7 873 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 MTERF4Q7Z6M4 381 aaKnown RBP9.16□□□□□ -0.94
SF3A3-204ENST00000462258 ANKRD46Q86W74 232 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 CLEC4FQ8N1N0 589 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 CNEP1R1Q8N9A8 125 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 B4GALNT2Q8NHY0 566 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 FNDC9Q8TBE3 224 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 PHOSPHO1Q8TCT1 267 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 ACTRT2Q8TDY3 377 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 FAM222BQ8WU58 562 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 TESCQ96BS2 214 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 RNF145Q96MT1 663 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 DNAJB12Q9NXW2 375 aaKnown RBP9.16□□□□□ -0.94
SF3A3-204ENST00000462258 NKIRAS1Q9NYS0 192 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 STOML1Q9UBI4 398 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 MARCOQ9UEW3 520 aaPredicted RBP9.16□□□□□ -0.94
SF3A3-204ENST00000462258 KCNE3Q9Y6H6 103 aa9.16□□□□□ -0.94
SF3A3-204ENST00000462258 A6NNC1 897 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 H3BNH8 94 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 ANKRD28O15084 1053 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 SNNO75324 88 aaPredicted RBP9.15□□□□□ -0.94
SF3A3-204ENST00000462258 TNFRSF21O75509 655 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 CTAG2O75638 210 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 SMNDC1O75940 238 aaKnown RBP eCLIP9.15□□□□□ -0.94
SF3A3-204ENST00000462258 SOX30O94993 753 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 AK1P00568 194 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 MATN1P21941 496 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 EIF1AXP47813 144 aaKnown RBP9.15□□□□□ -0.94
SF3A3-204ENST00000462258 SLC18A1P54219 525 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 ATP12AP54707 1039 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 SUMO3P55854 103 aaPredicted RBP9.15□□□□□ -0.94
SF3A3-204ENST00000462258 SIRPAP78324 504 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 OCRLQ01968 901 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 FOXF1Q12946 379 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 SGCBQ16585 318 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 FAM174BQ3ZCQ3 159 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.15□□□□□ -0.94
SF3A3-204ENST00000462258 ANXA8L1Q5VT79 327 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 ATG16L1Q676U5 607 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 VWA1Q6PCB0 445 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 C6orf120Q7Z4R8 191 aa9.15□□□□□ -0.94
SF3A3-204ENST00000462258 WDR75Q8IWA0 830 aaKnown RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms