RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CTRCQ99895 268 aa3.62□□□□□ -1.83
HMGB3-203ENST00000430118 ASCL2Q99929 193 aa3.62□□□□□ -1.83
HMGB3-203ENST00000430118 GANQ9H2C0 597 aa3.62□□□□□ -1.83
HMGB3-203ENST00000430118 DDX31Q9H8H2 851 aaKnown RBP3.62□□□□□ -1.83
HMGB3-203ENST00000430118 PELI2Q9HAT8 420 aa3.62□□□□□ -1.83
HMGB3-203ENST00000430118 PALMDQ9NP74 551 aa3.62□□□□□ -1.83
HMGB3-203ENST00000430118 SOHLH2Q9NX45 425 aa3.62□□□□□ -1.83
HMGB3-203ENST00000430118 GIN1Q9NXP7 522 aa3.62□□□□□ -1.83
HMGB3-203ENST00000430118 SLC39A1Q9NY26 324 aa3.62□□□□□ -1.83
HMGB3-203ENST00000430118 MBD2Q9UBB5 411 aa3.62□□□□□ -1.83
HMGB3-203ENST00000430118 UXTQ9UBK9 157 aaPredicted RBP3.62□□□□□ -1.83
HMGB3-203ENST00000430118 EPHA6Q9UF33 1036 aa3.62□□□□□ -1.83
HMGB3-203ENST00000430118 TMED7Q9Y3B3 224 aa3.62□□□□□ -1.83
HMGB3-203ENST00000430118 HEY1Q9Y5J3 304 aa3.62□□□□□ -1.83
HMGB3-203ENST00000430118 NUP205Q92621 2012 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 MUC22E2RYF6 1773 aaPredicted RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 ZNF462Q96JM2 2506 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 F5P12259 2224 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 IGLV9-49A0A0B4J1Y8 123 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 IGHV4-61A0A0C4DH41 118 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 LRRIQ4A6NIV6 560 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 E5RGE8 158 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 GOLGA8RI6L899 631 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 EEF2KO00418 725 aaKnown RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 LAD1O00515 517 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 CCSO14618 274 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 KLF11O14901 512 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 MSH4O15457 936 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 PRAMEF12O95522 483 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 ECDO95905 644 aaPredicted RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 PAHP00439 452 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 IGHV4-59P01825 116 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 APODP05090 189 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 RALAP11233 206 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 PAX1P15863 534 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 RPS2P15880 293 aaKnown RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 ITGB6P18564 788 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 LHCGRP22888 699 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 HSD17B2P37059 387 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 TNFRSF4P43489 277 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 PDLIM4P50479 330 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 DSCR9P59020 149 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 NANOS3P60323 173 aaKnown RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 ATP6V0D1P61421 351 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 GCNT1Q02742 428 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 MFGE8Q08431 387 aaPredicted RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 SMARCB1Q12824 385 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 GPR17Q13304 367 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 GPR50Q13585 617 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 MEF2DQ14814 521 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 TTMPQ5BVD1 217 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 ZNF542PQ5EBM4 170 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 METTL11BQ5VVY1 283 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 METTL21CQ5VZV1 264 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 KCTD16Q68DU8 428 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 SPECC1LQ69YQ0 1117 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 ATL3Q6DD88 541 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 SLC27A4Q6P1M0 643 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 ZCCHC12Q6PEW1 402 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 FAM159AQ6UWV7 190 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 ZNF600Q6ZNG1 722 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 FCRLAQ7L513 359 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 IFT20Q8IY31 132 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 ST13P4Q8IZP2 240 aaPredicted RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 CMTM8Q8IZV2 173 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 KLHDC1Q8N7A1 406 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 CCDC197Q8NCU1 140 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 OR7A2PQ8NGA2 310 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 OR4C15Q8NGM1 316 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 HCAR2Q8TDS4 363 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 C2orf15Q8WU43 125 aaKnown RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 NAT14Q8WUY8 206 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 FGF11Q92914 225 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 GLYATL1Q969I3 302 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 ESAMQ96AP7 390 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 ST6GAL2Q96JF0 529 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 ZNF48Q96MX3 618 aaPredicted RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 GPR137Q96N19 417 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 FCRL4Q96PJ5 515 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 RBM14Q96PK6 669 aaKnown RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 XPO6Q96QU8 1125 aaKnown RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 NAPGQ99747 312 aaPredicted RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 COQ7Q99807 217 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 CIB1Q99828 191 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 LXNQ9BS40 222 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 RHNO1Q9BSD3 238 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 NTMT1Q9BV86 223 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 RIBC2Q9H4K1 309 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 TFB2MQ9H5Q4 396 aaKnown RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 RAB9BQ9NP90 201 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 FAM114A2Q9NRY5 505 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 FAM212BQ9NTI7 297 aaPredicted RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 DUS2Q9NX74 493 aaKnown RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 TAS2R7Q9NYW3 318 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 MTRF1LQ9UGC7 380 aaKnown RBP3.61□□□□□ -1.83
HMGB3-203ENST00000430118 HMGXB4Q9UGU5 601 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 FAM153AQ9UHL3 310 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 VANGL2Q9ULK5 521 aa3.61□□□□□ -1.83
HMGB3-203ENST00000430118 NSG2Q9Y328 171 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms