RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 MUC3AQ02505 3323 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 A8MVM7 634 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 HNRNPCL2B2RXH8 293 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 ZBTB5O15062 677 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 MDM4O15151 490 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 HCN1O60741 890 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 SDC3O75056 442 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 CLPXO76031 633 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 ZBTB11O95625 1053 aaPredicted RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 STAMBPO95630 424 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 NUDT3O95989 172 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 IGLV2-14P01704 120 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 MT-ND1P03886 318 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 GAPDHP04406 335 aaKnown RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 ZNF20P17024 532 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 ZNF24P17028 368 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 MAT2AP31153 395 aaKnown RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 PPT1P50897 306 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 BCAP31P51572 246 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 ACTR3P61158 418 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 MFGE8Q08431 387 aaPredicted RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 SELPLGQ14242 412 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 SPHARQ15513 63 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 ETFDHQ16134 617 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 LCN1P1Q5VSP4 162 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 AGAP7PQ5VUJ5 663 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 SLC27A4Q6P1M0 643 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 METTL7BQ6UX53 244 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 ZNF788Q6ZQV5 615 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 RHOUQ7L0Q8 258 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 EIF3MQ7L2H7 374 aaKnown RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 BHLHA15Q7RTS1 189 aaPredicted RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 SLC16A9Q7RTY1 509 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 VSTM4Q8IW00 320 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 LINC00518Q8N0U6 118 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 UBE2J2Q8N2K1 259 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 SLC43A2Q8N370 569 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 OR4K14Q8NGD5 310 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 OR6M1Q8NGM8 313 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 SPATA22Q8NHS9 363 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 ZNF461Q8TAF7 563 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 FAM81AQ8TBF8 368 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 SMG7Q92540 1137 aaKnown RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 RAB39BQ96DA2 213 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 MED8Q96G25 268 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 ZFYVE19Q96K21 471 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 C12orf66Q96MD2 445 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 AGAP4Q96P64 663 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 APOOQ9BUR5 198 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 NXF5Q9H1B4 397 aaKnown RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 DHX33Q9H6R0 707 aaKnown RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 AGPAT5Q9NUQ2 364 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 EPHA6Q9UF33 1036 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 LRWD1Q9UFC0 647 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 CENPFP49454 3210 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 LAMA3Q16787 3333 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 SH2D1BO14796 132 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 RNF13O43567 381 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 SYT7O43581 403 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 ATP1B1P05026 303 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 ADORA3P0DMS8 318 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 PSG1P11464 419 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 HLA-DOBP13765 273 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 CTNNA2P26232 953 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 CSNK1EP49674 416 aaKnown RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 CCNHP51946 323 aaPredicted RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 TPM4P67936 248 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 HSF1Q00613 529 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 DNAJC3Q13217 504 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 EXT1Q16394 746 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 CALCRLQ16602 461 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 SRSF7Q16629 238 aaKnown RBP eCLIP2.27□□□□□ -2.05
MCF2-204ENST00000414978 DMRTC1Q5HYR2 192 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 STEAP1BQ6NZ63 245 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 TAS2R42Q7RTR8 314 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 TRMT11Q7Z4G4 463 aaKnown RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 PTAR1Q7Z6K3 402 aaPredicted RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 GPBP1Q86WP2 473 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 SFR1Q86XK3 245 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 LRRC49Q8IUZ0 686 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 CATSPER1Q8NEC5 780 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 NRBF2Q96F24 287 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 CPB2Q96IY4 423 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 NMNAT2Q9BZQ4 307 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 PLAC1Q9HBJ0 212 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 PXMP2Q9NR77 195 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 SPHK2Q9NRA0 654 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 GON4LQ3T8J9 2241 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 GCN1Q92616 2671 aaKnown RBP2.27□□□□□ -2.05
MCF2-204ENST00000414978 SF3B1O75533 1304 aaKnown RBP eCLIP2.27□□□□□ -2.05
MCF2-204ENST00000414978 MYBPHLA2RUH7 354 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 ASPDHA6ND91 283 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 LAD1O00515 517 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 HPRP00739 348 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 NGFP01138 241 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 PIGRP01833 764 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 ANXA3P12429 323 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 AHRP35869 848 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 NAMPTP43490 491 aa2.27□□□□□ -2.05
MCF2-204ENST00000414978 GSSP48637 474 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms