RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 C1orf87Q8N0U7 546 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 SVBPQ8N300 66 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 UTP4Q969X6 686 aaKnown RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 TSACCQ96A04 125 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 AKR1E2Q96JD6 320 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 COL21A1Q96P44 957 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 PBX4Q9BYU1 374 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 BCO1Q9HAY6 547 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 MIOXQ9UGB7 285 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 SLC7A8Q9UHI5 535 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 FBXL3Q9UKT7 428 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 MMP17Q9ULZ9 603 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 RNF6Q9Y252 685 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ATXN7O15265 892 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 SNAPINO95295 136 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ITGB2P05107 769 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 COL9A1P20849 921 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 RBMXP38159 391 aaKnown RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 CTBP1Q13363 440 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 TATDN3Q17R31 274 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 TEX44Q53QW1 395 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 OR4N5Q8IXE1 308 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 NLGN4XQ8N0W4 816 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 NLGN4YQ8NFZ3 816 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 OR2A12Q8NGT7 310 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 CASTOR1Q8WTX7 329 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 SORCS1Q8WY21 1168 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 DDIT4LQ96D03 193 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 MALSU1Q96EH3 234 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 TCEAL2Q9H3H9 227 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 FZD8Q9H461 694 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 FOLH1BQ9HBA9 442 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 A0A1B0GVI7 797 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ZNF320A2RRD8 509 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 SOX1O00570 391 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 PIAS1O75925 651 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 TSPAN15O95858 294 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 GSTM3P21266 225 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 PCGF2P35227 344 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 MAP2K4P45985 399 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 BDKRB1P46663 353 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 SSR4P51571 173 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ACTBP60709 375 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 RING1Q06587 406 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 HSPB3Q12988 150 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 TSTQ16762 297 aaKnown RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ZNF773Q6PK81 442 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 TECPR1Q7Z6L1 1165 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 TRAM1L1Q8N609 369 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 MFSD9Q8NBP5 474 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 S100A16Q96FQ6 103 aaKnown RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 GNRHR2Q96P88 292 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 RNF157Q96PX1 679 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 TBX5Q99593 518 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 MRI1Q9BV20 369 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 SAMD10Q9BYL1 202 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 SYT4Q9H2B2 425 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 PRO1933Q9H354 126 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 POT1Q9NUX5 634 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ZNF490Q9ULM2 529 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ZNF831Q5JPB2 1677 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ANKRD63C9JTQ0 380 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 PIAS2O75928 621 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ZNF182P17025 639 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 CASP3P42574 277 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 KCNC1P48547 511 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 NCBP2P52298 156 aaKnown RBP eCLIP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 EVX2Q03828 476 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 SPOCK1Q08629 439 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 TRA2AQ13595 282 aaKnown RBP eCLIP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 LEXMQ3ZCV2 418 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ARL13AQ5H913 290 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 MS4A13Q5J8X5 152 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ETV3LQ6ZN32 361 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 LINC00696Q6ZRV3 163 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 NOXA1Q86UR1 476 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ZSWIM9Q86XI8 627 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 RNF175Q8N4F7 328 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 BCORP1Q8N888 145 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 OR10A6Q8NH74 314 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 HPSE2Q8WWQ2 592 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 CYP2S1Q96SQ9 504 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 AKIRIN1Q9H9L7 192 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 CHODLQ9H9P2 273 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 IL19Q9UHD0 177 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ZNF346Q9UL40 294 aaKnown RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 SLCO1B1Q9Y6L6 691 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 IGLON5A6NGN9 336 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 NME1P15531 152 aaKnown RBP8.16□□□□□ -1.1
SYNE1-206ENST00000367253 GLB1P16278 677 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 CAPN3P20807 821 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ZNF92Q03936 586 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 PDZD11Q5EBL8 140 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 FAM209AQ5JX71 171 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 LRRC66Q68CR7 880 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 FAM198BQ6UWH4 519 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ANKRD33Q7Z3H0 272 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ETFBKMTQ8IXQ9 262 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 MTURNQ8N3F0 131 aa8.16□□□□□ -1.1
SYNE1-206ENST00000367253 ZNF808Q8N4W9 903 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms