RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 GALNT6Q8NCL4 622 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 BRIX1Q8TDN6 353 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 MED18Q9BUE0 208 aa19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 USP36Q9P275 1121 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-203ENST00000359902 OR5K4A6NMS3 321 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 SOCS6O14544 535 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 IGHA1P01876 353 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 FUT1P19526 365 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 SLC9A3P48764 834 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 COPZ1P61923 177 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 ZMAT1Q5H9K5 638 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 CD200R1LQ6Q8B3 271 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 TAF8Q7Z7C8 310 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 RNF113BQ8IZP6 322 aaKnown RBP19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 OR8H2Q8N162 312 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 PFN4Q8NHR9 129 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 TMEM239Q8WW34 195 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 ENKD1Q9H0I2 346 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 OR52D1Q9H346 318 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 FAM60AQ9NP50 221 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 C20orf141Q9NUB4 165 aa19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 SIDT1Q9NXL6 827 aaKnown RBP19.33■□□□□ 0.69
CCDC88B-203ENST00000359902 BRINP1O60477 761 aa19.33■□□□□ 0.68
CCDC88B-203ENST00000359902 ZNF79Q15937 498 aa19.33■□□□□ 0.68
CCDC88B-203ENST00000359902 DGAT2L6Q6ZPD8 337 aa19.33■□□□□ 0.68
CCDC88B-203ENST00000359902 SYT14Q8NB59 555 aa19.33■□□□□ 0.68
CCDC88B-203ENST00000359902 GAS2L1Q99501 681 aaPredicted RBP19.33■□□□□ 0.68
CCDC88B-203ENST00000359902 H2AFY2Q9P0M6 372 aaPredicted RBP19.33■□□□□ 0.68
CCDC88B-203ENST00000359902 FAM183AA6NL82 134 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 SHISA7A6NL88 538 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 H3BQ06 376 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 SNPHO15079 494 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 CTSBP07858 339 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 IFI6P09912 130 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 FGF9P31371 208 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 POU6F2P78424 691 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 PLAURQ03405 335 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 CCINQ13939 588 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 ZAR1Q86SH2 424 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 SLC44A3Q8N4M1 653 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 TXNDC15Q96J42 360 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 CCDC3Q9BQI4 270 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 KATNB1Q9BVA0 655 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 MIXL1Q9H2W2 232 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 ABCB9Q9NP78 766 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 ATP13A2Q9NQ11 1180 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 INIPQ9NRY2 104 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 TBC1D24Q9ULP9 559 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 CLCA2Q9UQC9 943 aa19.32■□□□□ 0.68
CCDC88B-203ENST00000359902 SPTY2D1-AS1A0A0U1RR47 76 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 OR5K3A6NET4 321 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 FMO6PO60774 539 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 AK1P00568 194 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 SELENBP1Q13228 472 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 FZD2Q14332 565 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 CXXC5Q7LFL8 322 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 HS6ST2Q96MM7 605 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 CD180Q99467 661 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 SSX4O60224 188 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 RDH16O75452 317 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 CBX7O95931 251 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 APOA1P02647 267 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 IFI30P13284 250 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 TYRP1P17643 537 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 TBXA2RP21731 343 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 RAB38P57729 211 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 C1orf61Q13536 156 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 CARTPTQ16568 116 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 KIAA0895LQ68EN5 471 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 KLHL36Q8N4N3 616 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 SMRP1Q8NCR6 262 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 FANK1Q8TC84 345 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 PMM1Q92871 262 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 NECTIN4Q96NY8 510 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 SECISBP2Q96T21 854 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 GSTK1Q9Y2Q3 226 aa19.31■□□□□ 0.68
CCDC88B-203ENST00000359902 TRDV1A0A1B0GX56 115 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 A0A1W2PQL4 384 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 J3QRE1 110 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 BHLHE40O14503 412 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 NKX2-2O95096 273 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 ST6GAL1P15907 406 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 ATP6V1E1P36543 226 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 CCR5P51681 352 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 ACSM1Q08AH1 577 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 BAK1Q16611 211 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 PLBD1Q6P4A8 553 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 OOSP2Q86WS3 158 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 PSD4Q8NDX1 1056 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 OR9A4Q8NGU2 314 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 OTULINQ96BN8 352 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 JAM3Q9BX67 310 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 SRRQ9GZT4 340 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 TNFRSF10DQ9UBN6 386 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 SLC35E2P0CK97 266 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 HHEXQ03014 270 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 FZD5Q13467 585 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 DEFB110Q30KQ9 67 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 ZNF791Q3KP31 576 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 B3GLCTQ6Y288 498 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms