RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ZNF33BQ06732 778 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 MRPL10Q7Z7H8 261 aaKnown RBP9.33□□□□□ -0.92
COL6A3-201ENST00000295550 DPPA2Q7Z7J5 298 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 OR5AK2Q8NH90 309 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 TMEM234Q8WY98 164 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 OR8D2Q9GZM6 311 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 C19orf25Q9UFG5 118 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-201ENST00000295550 KIF25Q9UIL4 384 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 TSPAN11A1L157 253 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 THBS2P35442 1172 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 SPRYD4Q8WW59 207 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-201ENST00000295550 C2orf42Q9NWW7 574 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 PRSS3P35030 304 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 HABP2Q14520 560 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-201ENST00000295550 ARSIQ5FYB1 569 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 TMEM107Q6UX40 140 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 SSX9Q7RTT3 188 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 DBF4BQ8NFT6 615 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 ZNF559Q9BR84 538 aa9.33□□□□□ -0.92
COL6A3-201ENST00000295550 DNMT3AQ9Y6K1 912 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-201ENST00000295550 IMPA2O14732 288 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 GPR143P51810 404 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 GPR19Q15760 415 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 AVPI1Q5T686 147 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 FAM205BPQ63HN1 556 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 TAAR8Q969N4 342 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 ZNF43P17038 809 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 GABRA3P34903 492 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 BDH1Q02338 343 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 MANEALQ5VSG8 457 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 PXYLP1Q8TE99 480 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 NT5C3BQ969T7 300 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 SLC2A5P22732 501 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 KCNC1P48547 511 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 TGM4P49221 684 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 SF3A2Q15428 464 aaKnown RBP9.32□□□□□ -0.92
COL6A3-201ENST00000295550 OR9A1PQ8NGU1 263 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 GPR52Q9Y2T5 361 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 MEIOCA2RUB1 952 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 TTLL8A6PVC2 850 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 ADAM10O14672 748 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 HPGDSO60760 199 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 INHAP05111 366 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 MEF2DQ14814 521 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 OR51Q1Q8NH59 317 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 TCEAL2Q9H3H9 227 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-201ENST00000295550 ARNT2Q9HBZ2 717 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 ATXN7L1Q9ULK2 861 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-201ENST00000295550 ZNF840PA6NDX5 716 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 NDUFV2P19404 249 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 CX3CR1P49238 355 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 PLGLAQ15195 96 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 OR51T1Q8NGJ9 327 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 CD99L2Q8TCZ2 262 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 SGCZQ96LD1 299 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 THAP7Q9BT49 309 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-201ENST00000295550 C20orf27Q9GZN8 174 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 MYEF2Q9P2K5 600 aaKnown RBP9.32□□□□□ -0.92
COL6A3-201ENST00000295550 RGPD3A6NKT7 1758 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-201ENST00000295550 RGPD4Q7Z3J3 1758 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 A0A1W2PRU2 124 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 CDK4P11802 303 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 PREPP48147 710 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 ZNF789Q5FWF6 425 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 CST9LP1Q5W188 147 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 TMEM225Q6GV28 225 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 OR2A12Q8NGT7 310 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 FOXRED1Q96CU9 486 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-201ENST00000295550 ELP4Q96EB1 424 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 OCSTAMPQ9BR26 566 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 RAB19A4D1S5 217 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 MROH6A6NGR9 719 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 A6NLC8 198 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 DVL2O14641 736 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 MAGEB4O15481 346 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-201ENST00000295550 ERVPABLB-1P60509 514 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 FAM69AQ5T7M9 428 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 METTL27Q8N6F8 245 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-201ENST00000295550 OR5H6Q8NGV6 325 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 SLC30A3Q99726 388 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 HIF1ANQ9NWT6 349 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 GPR45Q9Y5Y3 372 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 SCN5AQ14524 2016 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 H0Y8G0 127 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 PER3P56645 1201 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 DNAJC22Q8N4W6 341 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 MS4A15Q8N5U1 240 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 DNAJA3Q96EY1 480 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 WDR83Q9BRX9 315 aaKnown RBP9.32□□□□□ -0.92
COL6A3-201ENST00000295550 SMIM3Q9BZL3 60 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 GORASP2Q9H8Y8 452 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 DCAF13Q9NV06 445 aaKnown RBP9.32□□□□□ -0.92
COL6A3-201ENST00000295550 SAGE1Q9NXZ1 904 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 LIPT1Q9Y234 373 aa9.32□□□□□ -0.92
COL6A3-201ENST00000295550 ACTL6BO94805 426 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 SOD2P04179 222 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 NPBWR1P48145 328 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 SLC25A18Q9H1K4 315 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 D6RAR5 112 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 HOXA9P31269 272 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms