RNA–Protein interactions for RNA: ENST00000624887.1

PCDHB11-202, Transcript of protocadherin beta 11, humanhuman

TSL 2 BASIC

Gene PCDHB11, Length 1,973 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-202ENST00000624887 IGLV3-21P80748 117 aaPredicted RBP18.3■□□□□ 0.52
PCDHB11-202ENST00000624887 RPL6Q02878 288 aaKnown RBP18.3■□□□□ 0.52
PCDHB11-202ENST00000624887 TMED1Q13445 227 aa18.3■□□□□ 0.52
PCDHB11-202ENST00000624887 ZNF620Q6ZNG0 422 aa18.3■□□□□ 0.52
PCDHB11-202ENST00000624887 MFSD4AQ8N468 514 aa18.3■□□□□ 0.52
PCDHB11-202ENST00000624887 OR52I1Q8NGK6 324 aa18.3■□□□□ 0.52
PCDHB11-202ENST00000624887 MCFD2Q8NI22 146 aa18.3■□□□□ 0.52
PCDHB11-202ENST00000624887 PEX11GQ96HA9 241 aa18.3■□□□□ 0.52
PCDHB11-202ENST00000624887 MIR1-1HGQ9H1L0 117 aa18.3■□□□□ 0.52
PCDHB11-202ENST00000624887 PLCL2Q9UPR0 1127 aa18.3■□□□□ 0.52
PCDHB11-202ENST00000624887 LMO7DNF2Z398 122 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 TGFBR3LH3BV60 316 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 HRO43593 1189 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 GUSBP08236 651 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 CD97P48960 835 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 EMDP50402 254 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 HNRNPKP61978 463 aaKnown RBP eCLIP18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 PSG6Q00889 435 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 STX4Q12846 297 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 OR1Q1Q15612 314 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 ZNF404Q494X3 552 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 KLHL22Q53GT1 634 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 SOWAHCQ53LP3 525 aaPredicted RBP18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 CLEC12AQ5QGZ9 265 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 GARNL3Q5VVW2 1013 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 SIX5Q8N196 739 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 AMER2Q8N7J2 671 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 CLDN22Q8N7P3 220 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 OR6C4Q8NGE1 309 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 RIT1Q92963 219 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 RBM18Q96H35 190 aaKnown RBP18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 NELL2Q99435 816 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 MMP27Q9H306 513 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 HHATLQ9HCP6 504 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 A3GALT2U3KPV4 340 aa18.29■□□□□ 0.52
PCDHB11-202ENST00000624887 METTL15A6NJ78 407 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 BMP4P12644 408 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 MLLT3P42568 568 aaPredicted RBP18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 GAS1P54826 345 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 NXPH1P58417 271 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 ZNHIT3Q15649 155 aaPredicted RBP18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 OGFOD3Q6PK18 319 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 BTLAQ7Z6A9 289 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 ZAR1Q86SH2 424 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 RNF113BQ8IZP6 322 aaKnown RBP18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 CYP4Z2PQ8N1L4 340 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 SDR16C5Q8N3Y7 309 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 OR4Q3Q8NH05 313 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 TEX12Q9BXU0 123 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 RNF167Q9H6Y7 350 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 EVA1AQ9H8M9 152 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 FOLH1BQ9HBA9 442 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 CCDC59Q9P031 241 aaKnown RBP18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 CDH10Q9Y6N8 788 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 IRGMA1A4Y4 181 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 TLCD2A6NGC4 264 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 KDM4EB2RXH2 506 aaPredicted RBP18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 CLDN4O14493 209 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 CDC42EP2O14613 210 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 DSCR3O14972 297 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 CBFA2T3O75081 653 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 LYPD3O95274 346 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 HBQ1P09105 142 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 ENDOUP21128 410 aaKnown RBP18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 GFERP55789 205 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 MAT1AQ00266 395 aaKnown RBP18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 PLAURQ03405 335 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 RAB40BQ12829 278 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 SRSF5Q13243 272 aaKnown RBP18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 DEFB133Q30KQ1 61 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 FLYWCH1Q4VC44 716 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 C3orf38Q5JPI3 329 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 SLC30A6Q6NXT4 461 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 ANKK1Q8NFD2 765 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 C1orf216Q8TAB5 229 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 HSPA12BQ96MM6 686 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 TGM7Q96PF1 710 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 CHRNA10Q9GZZ6 450 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 PRTFDC1Q9NRG1 225 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 GPR52Q9Y2T5 361 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 CLDN16Q9Y5I7 305 aa18.28■□□□□ 0.52
PCDHB11-202ENST00000624887 SPTBP11277 2137 aa18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 IGHV5-51A0A0C4DH38 117 aa18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 MYL12BO14950 172 aa18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 SURF4O15260 269 aa18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 HNRNPCP07910 306 aaKnown RBP eCLIP18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 DRD5P21918 477 aa18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 ITGADQ13349 1161 aa18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 C1DQ13901 141 aaKnown RBP18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 INAQ16352 499 aa18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 MINDY4Q4G0A6 757 aa18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 WDR88Q6ZMY6 472 aa18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 C11orf74Q86VG3 221 aa18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 ABTB1Q969K4 478 aaPredicted RBP18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 VSTM2LQ96N03 204 aa18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 NXF2Q9GZY0 626 aaKnown RBP18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 CAPN10Q9HC96 672 aa18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 FGF20Q9NP95 211 aaPredicted RBP18.27■□□□□ 0.52
PCDHB11-202ENST00000624887 MED17Q9NVC6 651 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms