RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PEX1O43933 1283 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 TRIM3O75382 744 aaPredicted RBP18.03■□□□□ 0.48
UPF3A-211ENST00000618700 UGT2B17O75795 530 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 RPS4Y1P22090 263 aaKnown RBP18.03■□□□□ 0.48
UPF3A-211ENST00000618700 GPR85P60893 370 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 FOXO1Q12778 655 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 SCARB2Q14108 478 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 GPR68Q15743 365 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 KLHL26Q53HC5 615 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 RPS26P11Q5JNZ5 115 aaPredicted RBP18.03■□□□□ 0.48
UPF3A-211ENST00000618700 C16orf89Q6UX73 402 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 BBS10Q8TAM1 723 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 PMM1Q92871 262 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 DOHHQ9BU89 302 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 BCL2L10Q9HD36 194 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.03■□□□□ 0.48
UPF3A-211ENST00000618700 HRH3Q9Y5N1 445 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 WIF1Q9Y5W5 379 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 EML6Q6ZMW3 1958 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 LRRC3CA6NJW4 275 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 KLRC4-KLRK1H3BQV0 150 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 SCDO00767 359 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 SNX4O95219 450 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 PGM3O95394 542 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 PCGF2P35227 344 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 DNASE1L1P49184 302 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 MEOX1P50221 254 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 PCBP3P57721 371 aaKnown RBP18.02■□□□□ 0.48
UPF3A-211ENST00000618700 MXRA7P84157 204 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 BNIP1Q12981 228 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 MAPK14Q16539 360 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 VMACQ2NL98 169 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 FNDC7Q5VTL7 733 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 REEP3Q6NUK4 255 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 RINLQ6ZS11 566 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 PTRH1Q86Y79 214 aaKnown RBP18.02■□□□□ 0.48
UPF3A-211ENST00000618700 ZNF527Q8NB42 609 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 ZFP62Q8NB50 900 aaPredicted RBP18.02■□□□□ 0.48
UPF3A-211ENST00000618700 HIPK4Q8NE63 616 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 ZG16BQ96DA0 208 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 TMEM41AQ96HV5 264 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 TBL1XR1Q9BZK7 514 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 C1orf21Q9H246 121 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 PIF1Q9H611 641 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 LUZP4Q9P127 313 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 SUCOQ9UBS9 1254 aaKnown RBP18.02■□□□□ 0.48
UPF3A-211ENST00000618700 USP22Q9UPT9 525 aa18.02■□□□□ 0.48
UPF3A-211ENST00000618700 A0A0G2JPF8 293 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 AGAP5A6NIR3 686 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 HNRNPCL2B2RXH8 293 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 HNRNPCL3B7ZW38 293 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 C5orf58C9J3I9 102 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 SCO2O43819 266 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 HNRNPCL1O60812 293 aaKnown RBP18.01■□□□□ 0.47
UPF3A-211ENST00000618700 DNAJA2O60884 412 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 HNRNPCL4P0DMR1 293 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 GSK3BP49841 420 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 EEFSECP57772 596 aaKnown RBP18.01■□□□□ 0.47
UPF3A-211ENST00000618700 KCNJ2P63252 427 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 LIPEQ05469 1076 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 PDZK1Q5T2W1 519 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 ERICH5Q6P6B1 374 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.01■□□□□ 0.47
UPF3A-211ENST00000618700 MARCH3Q86UD3 253 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 SLC30A8Q8IWU4 369 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 DEFB107AQ8IZN7 70 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 OR2T12Q8NG77 320 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 ZNF597Q96LX8 424 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 QRSL1Q9H0R6 528 aaKnown RBP18.01■□□□□ 0.47
UPF3A-211ENST00000618700 ALG2Q9H553 416 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 MTHFD2LQ9H903 347 aaPredicted RBP18.01■□□□□ 0.47
UPF3A-211ENST00000618700 TUBA8Q9NY65 449 aaPredicted RBP18.01■□□□□ 0.47
UPF3A-211ENST00000618700 TAS2R1Q9NYW7 299 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 GMPR2Q9P2T1 348 aaKnown RBP18.01■□□□□ 0.47
UPF3A-211ENST00000618700 ANGPT4Q9Y264 503 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 DTNAQ9Y4J8 743 aa18.01■□□□□ 0.47
UPF3A-211ENST00000618700 C17orf51A8MQB3 221 aa18■□□□□ 0.47
UPF3A-211ENST00000618700 B4DXG7 233 aa18■□□□□ 0.47
UPF3A-211ENST00000618700 RASAL1O95294 804 aa18■□□□□ 0.47
UPF3A-211ENST00000618700 ANGPTL1O95841 491 aa18■□□□□ 0.47
UPF3A-211ENST00000618700 ETS2P15036 469 aa18■□□□□ 0.47
UPF3A-211ENST00000618700 HPGDP15428 266 aa18■□□□□ 0.47
UPF3A-211ENST00000618700 CLK3P49761 638 aaKnown RBP18■□□□□ 0.47
UPF3A-211ENST00000618700 PMP22Q01453 160 aa18■□□□□ 0.47
UPF3A-211ENST00000618700 INPP5JQ15735 1006 aaPredicted RBP18■□□□□ 0.47
UPF3A-211ENST00000618700 CD226Q15762 336 aa18■□□□□ 0.47
UPF3A-211ENST00000618700 COLEC12Q5KU26 742 aa18■□□□□ 0.47
UPF3A-211ENST00000618700 FAM98AQ8NCA5 519 aaKnown RBP18■□□□□ 0.47
UPF3A-211ENST00000618700 SLC7A6OSQ96CW6 309 aaPredicted RBP18■□□□□ 0.47
UPF3A-211ENST00000618700 TAAR6Q96RI8 345 aa18■□□□□ 0.47
UPF3A-211ENST00000618700 BOKQ9UMX3 212 aaPredicted RBP18■□□□□ 0.47
UPF3A-211ENST00000618700 SEC23IPQ9Y6Y8 1000 aaKnown RBP18■□□□□ 0.47
UPF3A-211ENST00000618700 CFAP46Q8IYW2 2715 aa18■□□□□ 0.47
UPF3A-211ENST00000618700 SMG1Q96Q15 3661 aaKnown RBP18■□□□□ 0.47
UPF3A-211ENST00000618700 IGLV3-32A0A0A0MS00 114 aa17.99■□□□□ 0.47
UPF3A-211ENST00000618700 ELOVL7A1L3X0 281 aa17.99■□□□□ 0.47
UPF3A-211ENST00000618700 PRORSD1PA6NEY8 169 aa17.99■□□□□ 0.47
UPF3A-211ENST00000618700 SERINC4A6NH21 518 aa17.99■□□□□ 0.47
UPF3A-211ENST00000618700 EIF4E1BA6NMX2 242 aaKnown RBP17.99■□□□□ 0.47
UPF3A-211ENST00000618700 GCM2O75603 506 aaPredicted RBP17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms