RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PTPRCAPQ14761 206 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 HSPB2Q16082 182 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 SGCBQ16585 318 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 TAZQ16635 292 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 SLC5A12Q1EHB4 618 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 CXorf66Q5JRM2 361 aaPredicted RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 KRT39Q6A163 491 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 DHRS7BQ6IAN0 325 aaPredicted RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 SLC25A24Q6NUK1 477 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 RWDD4Q6NW29 188 aaKnown RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 ZCCHC12Q6PEW1 402 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 FIGLAQ6QHK4 219 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 MOB3CQ70IA8 216 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 HIST3H2AQ7L7L0 130 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 CENPVQ7Z7K6 275 aaPredicted RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 C12orf56Q8IXR9 622 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 METTL27Q8N6F8 245 aaPredicted RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 HORMAD2Q8N7B1 307 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 BANPQ8N9N5 519 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 OIT3Q8WWZ8 545 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 BCL2L2Q92843 193 aaPredicted RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 SEMA4DQ92854 862 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 C5orf30Q96GV9 206 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF354BQ96LW1 612 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 RMDN2Q96LZ7 410 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 INPP5KQ9BT40 448 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 OR2AG1Q9H205 316 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 CARD9Q9H257 536 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 SLC26A1Q9H2B4 701 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 GOLPH3LQ9H4A5 285 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 ANKZF1Q9H8Y5 726 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 EML4Q9HC35 981 aaKnown RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 FAM60AQ9NP50 221 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 MED29Q9NX70 200 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 ATXN10Q9UBB4 475 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 FBXW2Q9UKT8 454 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 POMT2Q9UKY4 750 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 DHDHQ9UQ10 334 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 PKP3Q9Y446 797 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 RAI1Q7Z5J4 1906 aaPredicted RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 TENM2Q9NT68 2774 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 IGHV4-30-2A0A087WSY4 118 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 A0A1B0GX78 115 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 CTAGE9A4FU28 777 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 TMEM247A6NEH6 219 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 SDR42E2A6NKP2 422 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 VSTM2BA6NLU5 285 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 GABRR3A8MPY1 467 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 DEFB108AA8MXU0 73 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 FAM25EA8MYX2 175 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 EEF1E1-BLOC1S5C9J1V9 151 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 TRAFD1O14545 582 aaPredicted RBP3.88□□□□□ -1.79
LINC00540-201ENST00000611481 TNFRSF13BO14836 293 aaPredicted RBP3.88□□□□□ -1.79
LINC00540-201ENST00000611481 BCKDKO14874 412 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 ANGPT2O15123 496 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 SLC16A5O15375 505 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 EEF1E1O43324 174 aaKnown RBP3.88□□□□□ -1.79
LINC00540-201ENST00000611481 UGDHO60701 494 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 DAB1O75553 588 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 HLA-DQA2P01906 255 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 MMP2P08253 660 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 IGHV4-31P0DP07 118 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 PFKFB1P16118 471 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 AHCYP23526 432 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 PRDX3P30048 256 aaKnown RBP3.88□□□□□ -1.79
LINC00540-201ENST00000611481 LONP1P36776 959 aaKnown RBP3.88□□□□□ -1.79
LINC00540-201ENST00000611481 SRP14P37108 136 aaKnown RBP3.88□□□□□ -1.79
LINC00540-201ENST00000611481 PTPN9P43378 593 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 OR1D4P47884 311 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 RPL34P49207 117 aaKnown RBP3.88□□□□□ -1.79
LINC00540-201ENST00000611481 DCDC1P59894 354 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 CETN1Q12798 172 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 DPYSQ14117 519 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 IHHQ14623 411 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 RPE65Q16518 533 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 MAJINQ3KP22 176 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 ODF3L2Q3SX64 289 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 AARDQ4LEZ3 155 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 BRMS1LQ5PSV4 323 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 FAM166AQ6J272 317 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 WASH2PQ6VEQ5 465 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 NLRP9Q7RTR0 991 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 RNF144BQ7Z419 303 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 CRLF3Q8IUI8 442 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 UEVLDQ8IX04 471 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 LAS2Q8IYD9 372 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 ELMOD2Q8IZ81 293 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 KDM8Q8N371 416 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 OR4E2Q8NGC2 313 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.88□□□□□ -1.79
LINC00540-201ENST00000611481 ELP5Q8TE02 316 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 SLC5A11Q8WWX8 675 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 EXT2Q93063 718 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 MRPL24Q96A35 216 aaKnown RBP3.88□□□□□ -1.79
LINC00540-201ENST00000611481 TMEM186Q96B77 213 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 SMC6Q96SB8 1091 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 RHNO1Q9BSD3 238 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 NCOR1P1Q9H4R4 102 aa3.88□□□□□ -1.79
LINC00540-201ENST00000611481 CNOT10Q9H9A5 744 aaKnown RBP3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms