RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CLDN24A6NM45 220 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 SIGLEC6O43699 453 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 CER1O95813 267 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 CFIP05156 583 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 CT45A8P0DMV1 189 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 CT45A9P0DMV2 189 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 OMPP47874 163 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 ATP12AP54707 1039 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 CDK5Q00535 292 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 ROR2Q01974 943 aaKnown RBP13.14□□□□□ -0.31
LIG3-205ENST00000585941 OR1Q1Q15612 314 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 ELAVL1Q15717 326 aaKnown RBP13.14□□□□□ -0.31
LIG3-205ENST00000585941 OCLNQ16625 522 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.14□□□□□ -0.31
LIG3-205ENST00000585941 CT45A2Q5DJT8 189 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 ARHGAP40Q5TG30 622 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 UBE2UQ5VVX9 321 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 MEDAGQ5VYS4 303 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 TMEM151BQ8IW70 566 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 MAML2Q8IZL2 1156 aaPredicted RBP13.14□□□□□ -0.31
LIG3-205ENST00000585941 NLGN4XQ8N0W4 816 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 STX19Q8N4C7 294 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 RCBTB1Q8NDN9 531 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 OSTF1Q92882 214 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 PRR14Q9BWN1 585 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 TRIM2Q9C040 744 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 HOXD1Q9GZZ0 328 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 GAREM1Q9H706 876 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 GPN2Q9H9Y4 310 aaPredicted RBP13.14□□□□□ -0.31
LIG3-205ENST00000585941 TMEM27Q9HBJ8 222 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 DHCR7Q9UBM7 475 aaKnown RBP13.14□□□□□ -0.31
LIG3-205ENST00000585941 CBLCQ9ULV8 474 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 SLC7A7Q9UM01 511 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 CLCA3PQ9Y6N3 262 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 NPIPB9F8W1W9 429 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 HRKO00198 91 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 POLR1CO15160 346 aaPredicted RBP13.13□□□□□ -0.31
LIG3-205ENST00000585941 INMTO95050 263 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 MYF5P13349 255 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 CCNA2P20248 432 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 ACVR2AP27037 513 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 RORAP35398 523 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 GP2P55259 537 aaKnown RBP13.13□□□□□ -0.31
LIG3-205ENST00000585941 HOXC5Q00444 222 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 DYNC1I2Q13409 638 aaKnown RBP13.13□□□□□ -0.31
LIG3-205ENST00000585941 GINS1Q14691 196 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 PDZK1Q5T2W1 519 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 SLC27A4Q6P1M0 643 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 GUSBP11Q6P575 273 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 ZNF550Q7Z398 422 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 PRICKLE2Q7Z3G6 844 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 ANKRD13BQ86YJ7 626 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 NKAIN4Q8IVV8 208 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 FAM26EQ8N5C1 309 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 CLDN22Q8N7P3 220 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 PTPMT1Q8WUK0 201 aaPredicted RBP13.13□□□□□ -0.31
LIG3-205ENST00000585941 CRELD1Q96HD1 420 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 SENP5Q96HI0 755 aaPredicted RBP13.13□□□□□ -0.31
LIG3-205ENST00000585941 HS6ST2Q96MM7 605 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 TIMMDC1Q9NPL8 285 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 MRTO4Q9UKD2 239 aaKnown RBP13.13□□□□□ -0.31
LIG3-205ENST00000585941 TMEM5Q9Y2B1 443 aa13.13□□□□□ -0.31
LIG3-205ENST00000585941 COL5A1P20908 1838 aaPredicted RBP13.12□□□□□ -0.31
LIG3-205ENST00000585941 NPIPA5A0A0B4J1W7 369 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 LY6G6EA0A0G2JKS1 128 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 TCRBV16S1A1N1A0A5B0 115 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 SNTNA6NMZ2 147 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 ENO4A6NNW6 628 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 NPIPA7E9PJI5 369 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 FADS2O95864 444 aaKnown RBP13.12□□□□□ -0.31
LIG3-205ENST00000585941 NPIPA8P0DM63 369 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 PCSK6P29122 969 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 LCN1P31025 176 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 PPICP45877 212 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 MASP1P48740 699 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 PCYT1AP49585 367 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 DCAF7P61962 342 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 RHAGQ02094 409 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 FGFBP1Q14512 234 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 MINDY4Q4G0A6 757 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 MFSD4BQ5TF39 518 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 RHBDD2Q6NTF9 364 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 NPSR1Q6W5P4 371 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 CCDC81Q6ZN84 652 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 ARHGAP22Q7Z5H3 698 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 MRGPREQ86SM8 312 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 SLITRK4Q8IW52 837 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 ZNF440Q8IYI8 595 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 CDK20Q8IZL9 346 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 B3GNT7Q8NFL0 401 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 OR14A16Q8NHC5 309 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 DAZLQ92904 295 aaKnown RBP13.12□□□□□ -0.31
LIG3-205ENST00000585941 SLC38A2Q96QD8 506 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 FUNDC2Q9BWH2 189 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 PNO1Q9NRX1 252 aaKnown RBP13.12□□□□□ -0.31
LIG3-205ENST00000585941 ENPP5Q9UJA9 477 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 SLC6A14Q9UN76 642 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 DTX4Q9Y2E6 619 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 RPL36Q9Y3U8 105 aaKnown RBP13.12□□□□□ -0.31
LIG3-205ENST00000585941 U3KQA8 63 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms